SMTL ID : 1w1d.1

Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to Inositol (1,3,4,5)-tetrakisphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.61, K.62, G.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.62, A:G.63

1 x AU: GOLD ION(Non-covalent)

AU.2: 2 residues within 4Å: Chain A: C.131, R.132 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.131, H2O.1

1 x 4IP: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE(Non-covalent)

4IP.3: 7 residues within 4Å: Chain A: K.60, K.62, R.67, R.69, Y.81, K.90, R.116 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.81, A:R.116 Water bridges: A:K.62, A:R.67, A:R.69, A:Y.118 Salt bridges: A:K.60, A:K.60, A:K.62, A:R.67, A:R.69, A:K.90, A:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komander, D. et al., Structural Insights Into the Regulation of Pdk1 by Phosphoinositides and Inositol Phosphates. Embo J. (2004)

Release Date

2004-11-19

Peptides

3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1

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