SMTL ID : 1waq.1

Crystal structure of human Growth and Differentiation Factor 5 (GDF-5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 5 residues within 4Å: Chain A: W.30, W.33, I.92, F.94, Y.106 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:W.30, A:W.33, A:I.92 Hydrogen bonds: A:Y.106, A:Y.106 MPD.2: 4 residues within 4Å: Chain A: N.61, V.64, I.65 Chain B: Y.106 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.106 MPD.3: 5 residues within 4Å: Chain A: D.31, D.32, I.34, I.35, I.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.34 MPD.4: 5 residues within 4Å: Chain B: W.30, W.33, I.92, F.94, Y.106 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.30, B:W.30, B:W.30, B:W.33, B:I.92 Hydrogen bonds: B:Y.106 MPD.5: 4 residues within 4Å: Chain A: Y.106 Chain B: N.61, V.64, I.65 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.106 MPD.6: 5 residues within 4Å: Chain B: D.31, D.32, I.34, I.35, I.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nickel, J. et al., A Single Residue of Gdf-5 Defines Binding Specificity to Bmp Receptor Ib. J.Mol.Biol. (2005)

Release Date

2005-05-19

Peptides

GROWTH/DIFFERENTIATION FACTOR 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GROWTH/DIFFERENTIATION FACTOR 5

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