SMTL ID : 6z3m.3 (2 other biounits)

Repulsive Guidance Molecule B (RGMB) in complex with Growth Differentiation Factor 5 (GDF5) and Neogenin 1 (NEO1).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 5.50 Å

Oligo State

hetero-2-6-2-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain D: D.29, Q.69, R.70, N.71 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.69, D:N.71 NAG.2: 4 residues within 4Å: Chain E: Y.42, N.59, A.60, N.61 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain F: Y.42, N.59, A.60, N.61 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malinauskas, T. et al., Repulsive guidance molecules lock growth differentiation factor 5 in an inhibitory complex. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-01

Peptides

Growth/differentiation factor 5: AB
RGM domain family member B: CDGHIJ
Neogenin: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

G
o

H
p

I
W

J
X

E
Q

F
R

Growth/differentiation factor 5

RGM domain family member B

Neogenin

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