SMTL ID : 1wb5.1 (1 other biounit)

S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with syringate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x SYR: SYRINGATE(Non-covalent)

SYR.1: 11 residues within 4Å: Chain A: A.166, M.167, L.170, G.191, D.192, W.194, I.231, A.232, N.235, H.270 Ligands: GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.167, A:D.192, A:D.192, A:N.235 Salt bridges: A:H.270

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.77, G.78, E.80, F.165, A.166, H.270, W.272 Ligands: SYR.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.270 Water bridges: A:G.78, A:G.78 GOL.3: 8 residues within 4Å: Chain A: K.68, Y.69, N.70, E.106, P.107, Y.144, H.293 Ligands: ACT.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.70, A:N.70, A:Y.144, A:Y.144 Water bridges: A:N.70, A:H.293

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 6 residues within 4Å: Chain A: K.67, K.68, Y.69, H.293 Ligands: GOL.3, CD.10 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.67, A:Y.69 Water bridges: A:K.67, A:K.68 Salt bridges: A:K.67, A:H.293

9 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.5: 3 residues within 4Å: Chain A: C.35, H.98, M.101 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.35, A:H.98, H2O.6 CD.6: 5 residues within 4Å: Chain A: E.106, H.288, E.291, H.295, H.297 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.106, A:H.288, A:E.291, A:H.295, A:H.297 CD.7: 1 residues within 4Å: Chain A: E.219 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.219, A:E.219 CD.8: 2 residues within 4Å: Chain A: H.159, H.292 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.159, A:H.292, H2O.7, H2O.8, H2O.11 CD.9: 2 residues within 4Å: Chain A: H.293 Ligands: CD.10 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.293, H2O.12, H2O.12 CD.10: 3 residues within 4Å: Chain A: H.293 Ligands: ACT.4, CD.9 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: ACT.4 CD.11: 3 residues within 4Å: Chain A: H.288, E.289, L.290 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:H.288, H2O.6, H2O.11, H2O.11, H2O.12, H2O.12 CD.12: 3 residues within 4Å: Chain A: E.138, Y.141, S.142 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.138, A:Y.141, H2O.7, H2O.7, H2O.7, H2O.7 CD.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarbouriech, N. et al., Molecular Determinants of Substrate Specificity in the Feruloyl Esterase Module of Xylanase 10B from Clostridium Thermocellum. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-02-02

Peptides

ENDO-1,4-BETA-XYLANASE Y: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-XYLANASE Y

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