SMTL ID : 1wbv.1

Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x LI3: 3-FLUORO-N-1H-INDOL-5-YL-5-MORPHOLIN-4-YLBENZAMIDE(Non-covalent)

LI3.1: 16 residues within 4Å: Chain A: A.51, K.53, E.71, L.75, M.78, V.83, I.84, L.104, T.106, I.141, I.146, H.148, I.166, L.167, D.168 Ligands: DMS.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.53, A:E.71, A:L.75, A:I.84, A:I.84, A:L.104, A:T.106, A:D.168 Hydrogen bonds: A:K.53, A:E.71, A:E.71, A:D.168 pi-Cation interactions: A:K.53

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: K.249, D.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.249, A:D.294 GOL.3: 6 residues within 4Å: Chain A: H.107, M.109, A.157, N.159, E.163, K.165 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.107, A:N.159, A:E.163 Water bridges: A:H.107, A:H.107, A:V.158 GOL.4: 4 residues within 4Å: Chain A: T.241, P.242, G.243, L.246 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.243, A:L.246 Water bridges: A:E.245, A:E.245, A:K.295, A:K.295

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 8 residues within 4Å: Chain A: V.38, A.51, T.106, H.107, L.108, M.109, F.169 Ligands: LI3.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gill, A.L. et al., Identification of Novel P38Alpha Map Kinase Inhibitors Using Fragment-Based Lead Generation. J.Med.Chem. (2005)

Release Date

2005-11-03

Peptides

MITOGEN-ACTIVATED PROTEIN KINASE 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MITOGEN-ACTIVATED PROTEIN KINASE 14

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