SMTL ID : 1wl4.1

Human cytosolic acetoacetyl-CoA thiolase complexed with CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.12, A.13, R.44, L.277, H.368 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.13 Water bridges: A:R.44, A:R.44, A:K.200 Salt bridges: A:R.44, A:H.368 SO4.2: 5 residues within 4Å: Chain A: Y.81 Chain B: H.156, E.289, P.290, S.291 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.291, B:S.291 Salt bridges: B:H.156 SO4.3: 4 residues within 4Å: Chain A: E.215, V.216, K.217, T.218 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.217, A:T.218, A:T.218 Water bridges: A:E.215, A:K.217, A:T.218, A:T.218 SO4.8: 5 residues within 4Å: Chain B: S.12, A.13, R.44, L.277, H.368 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.13 Water bridges: B:R.44, B:R.44, B:K.200 Salt bridges: B:R.44, B:H.368 SO4.9: 5 residues within 4Å: Chain A: H.156, E.289, P.290, S.291 Chain B: Y.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.291, A:S.291 Salt bridges: A:H.156 SO4.10: 4 residues within 4Å: Chain B: E.215, V.216, K.217, T.218 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.217, B:T.218, B:T.218 Water bridges: B:E.215, B:K.217, B:T.218, B:T.218 SO4.15: 5 residues within 4Å: Chain C: S.12, A.13, R.44, L.277, H.368 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.13 Water bridges: C:R.44, C:K.200 Salt bridges: C:R.44, C:H.368 SO4.16: 5 residues within 4Å: Chain C: Y.81 Chain D: H.156, E.289, P.290, S.291 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:S.291, D:S.291 Salt bridges: D:H.156 Water bridges: C:Y.81, C:Y.81 SO4.17: 4 residues within 4Å: Chain C: E.215, V.216, K.217, T.218 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.217, C:T.218, C:T.218, C:T.218 Water bridges: C:E.215, C:K.217 SO4.22: 5 residues within 4Å: Chain D: S.12, A.13, R.44, L.277, H.368 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.13 Water bridges: D:R.44, D:K.200 Salt bridges: D:R.44, D:H.368 SO4.23: 5 residues within 4Å: Chain C: H.156, E.289, P.290, S.291 Chain D: Y.81 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.291, C:S.291 Salt bridges: C:H.156 Water bridges: D:Y.81, D:Y.81 SO4.24: 4 residues within 4Å: Chain D: E.215, V.216, K.217, T.218 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:K.217, D:T.218, D:T.218, D:T.218 Water bridges: D:E.215, D:K.217

4 x COA: COENZYME A(Non-covalent)

COA.4: 21 residues within 4Å: Chain A: C.92, L.151, H.159, M.160, Q.186, R.223, S.226, M.231, L.234, Y.237, P.248, A.249, S.252, G.253, I.254, M.293, A.323, F.324, H.353 Chain D: K.136 Ligands: GOL.5 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:Y.237 Hydrogen bonds: A:H.159, A:Q.186, A:R.223, A:R.223, A:S.226, A:S.226, A:S.252, A:S.252, A:I.254 Water bridges: A:Y.237, A:G.253 pi-Cation interactions: A:R.223, A:R.223 Salt bridges: D:K.136, D:K.136 COA.11: 21 residues within 4Å: Chain B: C.92, L.151, H.159, M.160, Q.186, R.223, S.226, M.231, L.234, Y.237, P.248, A.249, S.252, G.253, I.254, M.293, A.323, F.324, H.353 Chain C: K.136 Ligands: GOL.12 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:Y.237 Hydrogen bonds: B:H.159, B:Q.186, B:R.223, B:R.223, B:S.226, B:S.226, B:S.252, B:S.252, B:I.254 Water bridges: B:Y.237, B:G.253 pi-Cation interactions: B:R.223, B:R.223 Salt bridges: C:K.136, C:K.136 COA.18: 21 residues within 4Å: Chain B: K.136 Chain C: C.92, L.151, H.159, M.160, Q.186, R.223, S.226, M.231, L.234, Y.237, P.248, A.249, S.252, G.253, I.254, M.293, A.323, F.324, H.353 Ligands: GOL.19 15 PLIP interactions: 13 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:Y.237 Hydrogen bonds: C:Q.186, C:R.223, C:R.223, C:S.226, C:S.226, C:S.252, C:S.252, C:I.254 Water bridges: C:H.159, C:G.253 pi-Cation interactions: C:R.223, C:R.223 Salt bridges: B:K.136, B:K.136 COA.25: 21 residues within 4Å: Chain A: K.136 Chain D: C.92, L.151, H.159, M.160, Q.186, R.223, S.226, M.231, L.234, Y.237, P.248, A.249, S.252, G.253, I.254, M.293, A.323, F.324, H.353 Ligands: GOL.26 15 PLIP interactions: 13 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:Y.237 Hydrogen bonds: D:Q.186, D:R.223, D:R.223, D:S.226, D:S.226, D:S.252, D:S.252, D:I.254 Water bridges: D:H.159, D:G.253 pi-Cation interactions: D:R.223, D:R.223 Salt bridges: A:K.136, A:K.136

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: R.223, H.224, G.225, S.226, N.227, A.230 Ligands: COA.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.223, A:R.223, A:R.223, A:N.227 Water bridges: A:N.227 GOL.6: 3 residues within 4Å: Chain A: N.187, E.190, N.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.190 Water bridges: A:E.190 GOL.7: 1 residues within 4Å: Chain A: K.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.170 GOL.12: 7 residues within 4Å: Chain B: R.223, H.224, G.225, S.226, N.227, A.230 Ligands: COA.11 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.223, B:R.223, B:R.223, B:N.227 Water bridges: B:N.227 GOL.13: 3 residues within 4Å: Chain B: N.187, E.190, N.191 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.190 Water bridges: B:E.190 GOL.14: 1 residues within 4Å: Chain B: K.170 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.170 GOL.19: 7 residues within 4Å: Chain C: R.223, H.224, G.225, S.226, N.227, A.230 Ligands: COA.18 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.223, C:R.223, C:R.223, C:N.227 Water bridges: C:N.227 GOL.20: 3 residues within 4Å: Chain C: N.187, E.190, N.191 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.190 Water bridges: C:E.190, C:E.190, C:E.190 GOL.21: 1 residues within 4Å: Chain C: K.170 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.170 GOL.26: 7 residues within 4Å: Chain D: R.223, H.224, G.225, S.226, N.227, A.230 Ligands: COA.25 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.223, D:R.223, D:R.223, D:N.227 Water bridges: D:N.227 GOL.27: 3 residues within 4Å: Chain D: N.187, E.190, N.191 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.190 Water bridges: D:E.190, D:E.190, D:E.190 GOL.28: 1 residues within 4Å: Chain D: K.170 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kursula, P. et al., High Resolution Crystal Structures of Human Cytosolic Thiolase (CT): A Comparison of the Active Sites of Human CT, Bacterial Thiolase, and Bacterial KAS I. J.Mol.Biol. (2005)

Release Date

2005-03-01

Peptides

acetyl-Coenzyme A acetyltransferase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

acetyl-Coenzyme A acetyltransferase 2

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