SMTL ID : 1wlu.1

Crystal structure of TT0310 protein from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: R.67 Chain B: R.67 Chain C: R.67 Chain D: R.67 Ligands: CL.3, CL.5, CL.7 Ligand excluded by PLIP CL.3: 7 residues within 4Å: Chain A: R.67 Chain B: R.67 Chain C: R.67 Chain D: R.67 Ligands: CL.1, CL.5, CL.7 Ligand excluded by PLIP CL.5: 7 residues within 4Å: Chain A: R.67 Chain B: R.67 Chain C: R.67 Chain D: R.67 Ligands: CL.1, CL.3, CL.7 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain A: R.67 Chain B: R.67 Chain C: R.67 Chain D: R.67 Ligands: CL.1, CL.3, CL.5 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: D.48, A.52, N.56, A.61, V.62, A.63 Chain C: H.35, G.40 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:D.48, A:N.56, A:A.63, C:G.40 GOL.4: 8 residues within 4Å: Chain B: D.48, A.52, N.56, A.61, V.62, A.63 Chain D: H.35, G.40 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:D.48, B:N.56, B:A.63, D:G.40 GOL.6: 8 residues within 4Å: Chain A: H.35, G.40 Chain C: D.48, A.52, N.56, A.61, V.62, A.63 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.40, C:D.48, C:N.56, C:A.63 GOL.8: 8 residues within 4Å: Chain B: H.35, G.40 Chain D: D.48, A.52, N.56, A.61, V.62, A.63 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:G.40, D:D.48, D:N.56, D:A.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kunishima, N. et al., A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI. J.Mol.Biol. (2005)

Release Date

2005-07-05

Peptides

phenylacetic acid degradation protein PaaI: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

phenylacetic acid degradation protein PaaI

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