SMTL ID : 1wn3.1 (1 other biounit)

Crystal structure of TT0310 protein from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.67 Chain B: R.67 Chain C: R.67 Chain D: R.67 Ligand excluded by PLIP

2 x HXC: HEXANOYL-COENZYME A(Non-covalent)

HXC.2: 23 residues within 4Å: Chain A: D.48, A.52, A.61, V.62, A.63, L.64, F.115 Chain C: N.33, L.34, H.35, T.37, A.38, H.39, G.40, Y.70, F.71, R.72, P.73, K.105 Chain D: S.90, R.91, R.92, T.93 21 PLIP interactions: 8 interactions with chain C, 6 interactions with chain A, 7 interactions with chain D Hydrophobic interactions: C:N.33, C:L.34, C:Y.70, A:A.52, A:V.62, A:L.64, A:F.115 Hydrogen bonds: C:Y.70, A:A.63, A:A.63, D:S.90, D:R.91, D:R.92, D:T.93 Water bridges: C:T.37, C:Y.70, D:T.93 Salt bridges: C:R.72, C:K.105, D:R.91, D:R.92 HXC.3: 19 residues within 4Å: Chain B: A.52, A.61, V.62, A.63, L.64 Chain C: S.90, R.91, R.92, T.93 Chain D: N.33, H.35, T.37, A.38, H.39, G.40, Y.70, F.71, R.72, P.73 14 PLIP interactions: 5 interactions with chain C, 5 interactions with chain B, 4 interactions with chain D Hydrogen bonds: C:R.91, C:R.92, C:T.93, B:A.63, B:A.63 Water bridges: C:S.90, D:L.74 Salt bridges: C:R.91, D:R.72 Hydrophobic interactions: B:A.52, B:V.62, B:L.64, D:N.33, D:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kunishima, N. et al., A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI. J.Mol.Biol. (2005)

Release Date

2005-07-05

Peptides

phenylacetic acid degradation protein PaaI: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

phenylacetic acid degradation protein PaaI

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