- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x BST: 6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID(Non-covalent)
BST.2: 21 residues within 4Å:- Chain A: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, A.76, R.82, L.85, S.86, P.87, C.88, C.91
- Chain B: W.128
- Chain C: Y.126, W.128
- Chain D: F.49
- Ligands: ZN.1
16 PLIP interactions:12 interactions with chain A, 1 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: A:E.25, A:S.28, A:S.28, A:A.55, A:E.56, A:E.56, A:C.88, C:Y.126, C:Y.126
- Water bridges: A:E.25, A:N.45
- Salt bridges: A:E.25, A:D.26, A:R.82
- Hydrophobic interactions: D:F.49
- pi-Stacking: C:Y.126
BST.5: 21 residues within 4Å:- Chain A: W.128
- Chain B: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, A.76, R.82, L.85, S.86, P.87, C.88, C.91
- Chain C: F.49
- Chain D: Y.126, W.128
- Ligands: ZN.4
16 PLIP interactions:12 interactions with chain B, 3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: B:E.25, B:S.28, B:S.28, B:A.55, B:E.56, B:E.56, B:C.88, D:Y.126, D:Y.126
- Water bridges: B:E.25, B:N.45
- Salt bridges: B:E.25, B:D.26, B:R.82
- pi-Stacking: D:Y.126
- Hydrophobic interactions: C:F.49
BST.8: 21 residues within 4Å:- Chain A: Y.126, W.128
- Chain B: F.49
- Chain C: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, A.76, R.82, L.85, S.86, P.87, C.88, C.91
- Chain D: W.128
- Ligands: ZN.7
14 PLIP interactions:11 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: C:E.25, C:S.28, C:S.28, C:A.55, C:E.56, C:E.56, C:C.88, A:Y.126
- Water bridges: C:N.45
- Salt bridges: C:E.25, C:D.26, C:R.82
- pi-Stacking: A:Y.126
- Hydrophobic interactions: B:F.49
BST.11: 21 residues within 4Å:- Chain A: F.49
- Chain B: Y.126, W.128
- Chain C: W.128
- Chain D: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, A.76, R.82, L.85, S.86, P.87, C.88, C.91
- Ligands: ZN.10
14 PLIP interactions:1 interactions with chain A, 11 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: A:F.49
- Hydrogen bonds: D:E.25, D:S.28, D:S.28, D:A.55, D:E.56, D:E.56, D:C.88, B:Y.126
- Water bridges: D:N.45
- Salt bridges: D:E.25, D:D.26, D:R.82
- pi-Stacking: B:Y.126
- 4 x ARS: ARSENIC(Non-covalent)
ARS.3: 4 residues within 4Å:- Chain A: E.7, C.73, I.105, A.115
No protein-ligand interaction detected (PLIP)ARS.6: 4 residues within 4Å:- Chain B: E.7, C.73, I.105, A.115
No protein-ligand interaction detected (PLIP)ARS.9: 4 residues within 4Å:- Chain C: E.7, C.73, I.105, A.115
No protein-ligand interaction detected (PLIP)ARS.12: 4 residues within 4Å:- Chain D: E.7, C.73, I.105, A.115
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumasaka, T. et al., Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc. J.Biol.Chem. (2007)
- Release Date
- 2005-10-25
- Peptides
- Blasticidin-S deaminase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x BST: 6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID(Non-covalent)
- 4 x ARS: ARSENIC(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumasaka, T. et al., Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc. J.Biol.Chem. (2007)
- Release Date
- 2005-10-25
- Peptides
- Blasticidin-S deaminase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B