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SMTL ID : 1wnl.1
Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with ADP
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
homo-dimer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
13 residues within 4Å:
Chain A:
G.47
,
R.48
,
L.49
,
N.50
,
R.51
,
K.52
,
W.53
,
E.54
,
K.111
,
N.131
,
P.137
,
A.140
,
R.233
22
PLIP interactions
:
22 interactions with chain A
Hydrogen bonds:
A:R.48
,
A:R.48
,
A:L.49
,
A:L.49
,
A:R.51
,
A:E.54
,
A:N.131
,
A:N.131
Water bridges:
A:K.100
,
A:K.100
,
A:K.100
,
A:K.111
,
A:K.111
,
A:R.233
,
A:R.233
,
A:R.233
Salt bridges:
A:R.51
,
A:K.111
,
A:K.111
,
A:R.233
pi-Stacking:
A:W.53
,
A:W.53
ADP.3:
12 residues within 4Å:
Chain B:
G.47
,
R.48
,
L.49
,
N.50
,
R.51
,
K.52
,
W.53
,
E.54
,
K.111
,
N.131
,
P.137
,
A.140
20
PLIP interactions
:
20 interactions with chain B
Hydrogen bonds:
B:G.47
,
B:R.48
,
B:L.49
,
B:R.51
,
B:E.54
,
B:N.131
,
B:N.131
Water bridges:
B:R.48
,
B:K.100
,
B:N.103
,
B:N.103
,
B:K.111
,
B:K.111
,
B:K.111
,
B:K.111
Salt bridges:
B:R.51
,
B:K.111
,
B:K.111
pi-Stacking:
B:W.53
,
B:W.53
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
9 residues within 4Å:
Chain A:
Q.42
,
H.46
,
W.53
,
G.114
,
V.115
,
L.116
,
G.127
,
I.128
,
G.129
8
PLIP interactions
:
8 interactions with chain A
Hydrogen bonds:
A:Q.42
,
A:Q.42
,
A:L.116
,
A:G.127
Water bridges:
A:T.22
,
A:H.46
,
A:V.115
,
A:V.115
GOL.4:
10 residues within 4Å:
Chain B:
Q.42
,
H.46
,
G.47
,
W.53
,
G.114
,
V.115
,
L.116
,
G.127
,
I.128
,
G.129
8
PLIP interactions
:
8 interactions with chain B
Hydrogen bonds:
B:Q.42
,
B:Q.42
,
B:L.116
,
B:G.127
Water bridges:
B:T.22
,
B:H.46
,
B:V.115
,
B:I.128
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bagautdinov, B. et al., Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation. J.Mol.Biol. (2005)
Release Date
2005-08-16
Peptides
biotin--[acetyl-CoA-carboxylase] ligase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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biotin--[acetyl-CoA-carboxylase] ligase
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