SMTL ID : 1wo8.1 (1 other biounit)

Crystal structure of methylglyoxal synthase from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.13, T.35, G.36, T.37, T.38, S.55, G.56 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.35, A:T.37, A:T.38, A:T.38, A:T.38, A:G.56 Water bridges: A:K.13, A:K.13, A:K.13, A:T.37, A:T.37 Salt bridges: A:K.13 SO4.2: 8 residues within 4Å: Chain B: D.10, K.13, T.35, G.36, T.37, T.38, S.55, G.56 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.8, B:T.35, B:T.37, B:T.37, B:T.38, B:T.38, B:G.56 Water bridges: B:K.13, B:T.37 Salt bridges: B:K.13 SO4.3: 7 residues within 4Å: Chain C: K.13, T.35, G.36, T.37, T.38, S.55, G.56 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.35, C:T.37, C:T.38, C:T.38, C:G.56 Water bridges: C:K.13, C:T.37, C:T.37 Salt bridges: C:K.13 SO4.4: 8 residues within 4Å: Chain D: A.8, K.13, T.35, G.36, T.37, T.38, S.55, G.56 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:T.35, D:T.37, D:T.37, D:T.37, D:T.38, D:G.56 Water bridges: D:K.13, D:K.13, D:K.13 Salt bridges: D:K.13 SO4.5: 3 residues within 4Å: Chain D: Q.43, V.50, R.52 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.43 Water bridges: D:R.52 Salt bridges: D:R.52 SO4.6: 7 residues within 4Å: Chain E: K.13, T.35, G.36, T.37, T.38, S.55, G.56 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:T.35, E:T.37, E:T.37, E:T.38, E:T.38, E:T.38, E:G.56 Salt bridges: E:K.13 SO4.7: 7 residues within 4Å: Chain F: K.13, T.35, G.36, T.37, T.38, S.55, G.56 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:T.35, F:T.37, F:T.38, F:T.38, F:G.56 Water bridges: F:K.13 Salt bridges: F:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugahara, M. et al., Crystal structure of methylglyoxal synthase from Thermus thermophilus HB8. To be Published

Release Date

2005-08-23

Peptides

methylglyoxal synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

methylglyoxal synthase

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