SMTL ID : 1wo8.2 (1 other biounit)

Crystal structure of methylglyoxal synthase from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-12-mer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.13, T.35, G.36, T.37, T.38, S.55, G.56 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.35, A:T.37, A:T.38, A:T.38, A:T.38, A:G.56 Water bridges: A:K.13, A:K.13, A:K.13, A:T.37, A:T.37 Salt bridges: A:K.13 SO4.2: 8 residues within 4Å: Chain B: D.10, K.13, T.35, G.36, T.37, T.38, S.55, G.56 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.8, B:T.35, B:T.37, B:T.37, B:T.38, B:T.38, B:G.56 Water bridges: B:K.13, B:T.37 Salt bridges: B:K.13 SO4.3: 7 residues within 4Å: Chain C: K.13, T.35, G.36, T.37, T.38, S.55, G.56 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.35, C:T.37, C:T.38, C:T.38, C:G.56 Water bridges: C:K.13, C:T.37, C:T.37 Salt bridges: C:K.13 SO4.4: 8 residues within 4Å: Chain D: A.8, K.13, T.35, G.36, T.37, T.38, S.55, G.56 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:T.35, D:T.37, D:T.37, D:T.37, D:T.38, D:G.56 Water bridges: D:K.13, D:K.13, D:K.13 Salt bridges: D:K.13 SO4.5: 3 residues within 4Å: Chain D: Q.43, V.50, R.52 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.43 Water bridges: D:R.52 Salt bridges: D:R.52 SO4.6: 7 residues within 4Å: Chain E: K.13, T.35, G.36, T.37, T.38, S.55, G.56 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:T.35, E:T.37, E:T.37, E:T.38, E:T.38, E:T.38, E:G.56 Salt bridges: E:K.13 SO4.7: 7 residues within 4Å: Chain F: K.13, T.35, G.36, T.37, T.38, S.55, G.56 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:T.35, F:T.37, F:T.38, F:T.38, F:G.56 Water bridges: F:K.13 Salt bridges: F:K.13 SO4.8: 7 residues within 4Å: Chain G: K.13, T.35, G.36, T.37, T.38, S.55, G.56 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:T.35, G:T.37, G:T.37, G:T.38, G:T.38, G:G.56 Water bridges: G:K.13, G:K.13, G:K.13, G:T.37 Salt bridges: G:K.13 SO4.9: 8 residues within 4Å: Chain H: D.10, K.13, T.35, G.36, T.37, T.38, S.55, G.56 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:A.8, H:T.35, H:T.37, H:T.38, H:G.56 Water bridges: H:K.13, H:T.37, H:T.37 Salt bridges: H:K.13 SO4.10: 7 residues within 4Å: Chain I: K.13, T.35, G.36, T.37, T.38, S.55, G.56 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:T.35, I:T.37, I:T.37, I:T.38, I:T.38, I:T.38, I:G.56 Water bridges: I:K.13, I:T.37 Salt bridges: I:K.13 SO4.11: 8 residues within 4Å: Chain J: A.8, K.13, T.35, G.36, T.37, T.38, S.55, G.56 10 PLIP interactions: 10 interactions with chain J Hydrogen bonds: J:T.35, J:T.37, J:T.37, J:T.38, J:T.38, J:G.56 Water bridges: J:K.13, J:K.13, J:K.13 Salt bridges: J:K.13 SO4.12: 3 residues within 4Å: Chain J: Q.43, V.50, R.52 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:Q.43 Water bridges: J:R.52 Salt bridges: J:R.52 SO4.13: 7 residues within 4Å: Chain K: K.13, T.35, G.36, T.37, T.38, S.55, G.56 6 PLIP interactions: 6 interactions with chain K Hydrogen bonds: K:T.35, K:T.37, K:T.38, K:T.38, K:G.56 Salt bridges: K:K.13 SO4.14: 7 residues within 4Å: Chain L: K.13, T.35, G.36, T.37, T.38, S.55, G.56 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:T.35, L:T.37, L:T.37, L:T.38, L:T.38, L:T.38, L:G.56 Water bridges: L:K.13 Salt bridges: L:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugahara, M. et al., Crystal structure of methylglyoxal synthase from Thermus thermophilus HB8. To be Published

Release Date

2005-08-23

Peptides

methylglyoxal synthase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

methylglyoxal synthase

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