SMTL ID : 1wof.1

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor N1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x I12: N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VALYL-N~1~-((1S)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE(Covalent)

I12.1: 23 residues within 4Å: Chain A: T.30, T.31, H.46, M.54, Y.59, F.145, L.146, N.147, G.148, S.149, C.150, H.168, H.169, M.170, E.171, P.173, H.177, D.192, R.193, Q.194, T.195, A.196, Q.197 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.30, A:H.46, A:M.54, A:M.170, A:P.173, A:Q.194 Hydrogen bonds: A:F.145, A:G.148, A:C.150, A:H.169, A:E.171, A:E.171, A:Q.194, A:T.195, A:Q.197 I12.2: 20 residues within 4Å: Chain B: T.31, H.46, M.54, F.145, N.147, G.148, S.149, C.150, H.168, H.169, M.170, E.171, P.173, H.177, D.192, R.193, Q.194, T.195, A.196, Q.197 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:H.46, B:N.147, B:D.192, B:Q.194, B:A.196 Hydrogen bonds: B:F.145, B:G.148, B:C.150, B:H.169, B:E.171, B:E.171, B:Q.194, B:T.195 Water bridges: B:N.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Design of Wide-Spectrum Inhibitors Targeting Coronavirus Main Proteases. Plos Biol. (2005)

Release Date

2005-08-30

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase

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