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SMTL ID : 1wqw.1
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 in complex with Biotinyl-5-AMP
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.45 Å
Oligo State
homo-dimer
Ligands
2 x
BT5
:
BIOTINYL-5-AMP
(Non-covalent)
BT5.1:
25 residues within 4Å:
Chain A:
S.21
,
T.22
,
N.23
,
Q.42
,
G.45
,
H.46
,
G.47
,
R.48
,
R.51
,
K.52
,
W.53
,
E.54
,
L.62
,
S.63
,
N.103
,
D.104
,
K.111
,
G.114
,
V.115
,
L.116
,
I.128
,
G.129
,
N.131
,
P.137
,
A.140
26
PLIP interactions
:
26 interactions with chain A
Hydrophobic interactions:
A:W.53
,
A:W.53
Hydrogen bonds:
A:T.22
,
A:N.23
,
A:Q.42
,
A:Q.42
,
A:H.46
,
A:H.46
,
A:R.48
,
A:R.51
,
A:E.54
,
A:N.103
,
A:K.111
,
A:V.115
,
A:N.131
,
A:N.131
Water bridges:
A:S.21
,
A:N.23
,
A:R.51
,
A:K.52
,
A:E.54
,
A:N.103
Salt bridges:
A:K.111
,
A:K.111
pi-Stacking:
A:W.53
,
A:W.53
BT5.2:
26 residues within 4Å:
Chain B:
S.21
,
T.22
,
N.23
,
Q.42
,
G.45
,
H.46
,
G.47
,
R.48
,
R.51
,
K.52
,
W.53
,
E.54
,
W.61
,
L.62
,
S.63
,
N.103
,
D.104
,
K.111
,
G.114
,
V.115
,
L.116
,
I.128
,
G.129
,
N.131
,
P.137
,
A.140
23
PLIP interactions
:
23 interactions with chain B
Hydrophobic interactions:
B:W.53
,
B:W.53
Hydrogen bonds:
B:T.22
,
B:N.23
,
B:Q.42
,
B:Q.42
,
B:H.46
,
B:H.46
,
B:R.48
,
B:L.49
,
B:R.51
,
B:R.51
,
B:E.54
,
B:N.103
,
B:K.111
,
B:N.131
,
B:N.131
Water bridges:
B:R.48
Salt bridges:
B:R.48
,
B:K.111
,
B:K.111
pi-Stacking:
B:W.53
,
B:W.53
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bagautdinov, B. et al., Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation. J.Mol.Biol. (2005)
Release Date
2005-10-04
Peptides
biotin--[acetyl-CoA-carboxylase] ligase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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biotin--[acetyl-CoA-carboxylase] ligase
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