SMTL ID : 1wz1.1

Crystal structure of the Fv fragment complexed with dansyl-lysine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-oligomer

Ligands

1 x DNS: N~6~-{[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}-L-LYSINE(Non-covalent)

DNS.1: 11 residues within 4Å: Chain A: F.60 Chain B: V.2, F.27, T.28, G.100, I.101, Y.102, Y.105, W.107, A.109, Y.110 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.2, B:F.27, B:Y.102, B:Y.105, B:Y.105, B:A.109 Hydrogen bonds: B:T.28, B:T.28 pi-Stacking: B:Y.102, B:Y.102, B:Y.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakasako, M. et al., Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten. J.Mol.Biol. (2005)

Release Date

2006-01-31

Peptides

Ig light chain: A
Ig heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Ig light chain

Ig heavy chain

Related Entries With Identical Sequence