SMTL ID : 1x35.2 (3 other biounits)

Recombinant T=3 capsid of a site specific mutant of SeMV CP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

homo-15-mer

Ligands

15 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.146, D.149 Chain B: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.146, A:D.149, B:Y.207, B:N.268 CA.2: 5 residues within 4Å: Chain A: Y.207, N.267, N.268 Chain C: D.146, D.149 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Metal complexes: C:D.146, C:D.149, A:Y.207, A:N.268 CA.3: 5 residues within 4Å: Chain B: D.146, D.149 Chain C: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Metal complexes: C:Y.207, C:N.268, B:D.146, B:D.149 CA.4: 5 residues within 4Å: Chain D: D.146, D.149 Chain E: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Metal complexes: D:D.146, D:D.149, E:Y.207, E:N.268 CA.5: 5 residues within 4Å: Chain D: Y.207, N.267, N.268 Chain F: D.146, D.149 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F Metal complexes: D:Y.207, D:N.268, F:D.146, F:D.149 CA.6: 5 residues within 4Å: Chain E: D.146, D.149 Chain F: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain E Metal complexes: F:Y.207, F:N.268, E:D.146, E:D.149 CA.7: 5 residues within 4Å: Chain G: D.146, D.149 Chain H: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain G Metal complexes: H:Y.207, H:N.268, G:D.146, G:D.149 CA.8: 5 residues within 4Å: Chain G: Y.207, N.267, N.268 Chain I: D.146, D.149 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain I Metal complexes: G:Y.207, G:N.268, I:D.146, I:D.149 CA.9: 5 residues within 4Å: Chain H: D.146, D.149 Chain I: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain I Metal complexes: H:D.146, H:D.149, I:Y.207, I:N.268 CA.10: 5 residues within 4Å: Chain J: D.146, D.149 Chain K: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain J Metal complexes: K:Y.207, K:N.268, J:D.146, J:D.149 CA.11: 5 residues within 4Å: Chain J: Y.207, N.267, N.268 Chain L: D.146, D.149 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain L Metal complexes: J:Y.207, J:N.268, L:D.146, L:D.149 CA.12: 5 residues within 4Å: Chain K: D.146, D.149 Chain L: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain L Metal complexes: K:D.146, K:D.149, L:Y.207, L:N.268 CA.13: 5 residues within 4Å: Chain M: D.146, D.149 Chain N: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain N Metal complexes: M:D.146, M:D.149, N:Y.207, N:N.268 CA.14: 5 residues within 4Å: Chain M: Y.207, N.267, N.268 Chain O: D.146, D.149 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain O Metal complexes: M:Y.207, M:N.268, O:D.146, O:D.149 CA.15: 5 residues within 4Å: Chain N: D.146, D.149 Chain O: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain O, 2 interactions with chain N Metal complexes: O:Y.207, O:N.268, N:D.146, N:D.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sangita, V. et al., Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-10-18

Peptides

Coat protein: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

Coat protein

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