SMTL ID : 1x35.3 (3 other biounits)

Recombinant T=3 capsid of a site specific mutant of SeMV CP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

homo-18-mer

Ligands

18 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.146, D.149 Chain B: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:Y.207, B:N.268, A:D.146, A:D.149 CA.2: 5 residues within 4Å: Chain A: Y.207, N.267, N.268 Chain C: D.146, D.149 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Metal complexes: C:D.146, C:D.149, A:Y.207, A:N.268 CA.3: 5 residues within 4Å: Chain B: D.146, D.149 Chain C: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.146, B:D.149, C:Y.207, C:N.268 CA.4: 5 residues within 4Å: Chain D: D.146, D.149 Chain E: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Metal complexes: D:D.146, D:D.149, E:Y.207, E:N.268 CA.5: 5 residues within 4Å: Chain D: Y.207, N.267, N.268 Chain F: D.146, D.149 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain D Metal complexes: F:D.146, F:D.149, D:Y.207, D:N.268 CA.6: 5 residues within 4Å: Chain E: D.146, D.149 Chain F: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Metal complexes: E:D.146, E:D.149, F:Y.207, F:N.268 CA.7: 5 residues within 4Å: Chain G: D.146, D.149 Chain H: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain H Metal complexes: G:D.146, G:D.149, H:Y.207, H:N.268 CA.8: 5 residues within 4Å: Chain G: Y.207, N.267, N.268 Chain I: D.146, D.149 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain G Metal complexes: I:D.146, I:D.149, G:Y.207, G:N.268 CA.9: 5 residues within 4Å: Chain H: D.146, D.149 Chain I: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain H Metal complexes: I:Y.207, I:N.268, H:D.146, H:D.149 CA.10: 5 residues within 4Å: Chain J: D.146, D.149 Chain K: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain J Metal complexes: K:Y.207, K:N.268, J:D.146, J:D.149 CA.11: 5 residues within 4Å: Chain J: Y.207, N.267, N.268 Chain L: D.146, D.149 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain L Metal complexes: J:Y.207, J:N.268, L:D.146, L:D.149 CA.12: 5 residues within 4Å: Chain K: D.146, D.149 Chain L: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K Metal complexes: L:Y.207, L:N.268, K:D.146, K:D.149 CA.13: 5 residues within 4Å: Chain M: D.146, D.149 Chain N: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain N Metal complexes: M:D.146, M:D.149, N:Y.207, N:N.268 CA.14: 5 residues within 4Å: Chain M: Y.207, N.267, N.268 Chain O: D.146, D.149 4 PLIP interactions: 2 interactions with chain O, 2 interactions with chain M Metal complexes: O:D.146, O:D.149, M:Y.207, M:N.268 CA.15: 5 residues within 4Å: Chain N: D.146, D.149 Chain O: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain N, 2 interactions with chain O Metal complexes: N:D.146, N:D.149, O:Y.207, O:N.268 CA.16: 5 residues within 4Å: Chain P: D.146, D.149 Chain Q: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain P Metal complexes: Q:Y.207, Q:N.268, P:D.146, P:D.149 CA.17: 5 residues within 4Å: Chain P: Y.207, N.267, N.268 Chain R: D.146, D.149 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain R Metal complexes: P:Y.207, P:N.268, R:D.146, R:D.149 CA.18: 5 residues within 4Å: Chain Q: D.146, D.149 Chain R: Y.207, N.267, N.268 4 PLIP interactions: 2 interactions with chain R, 2 interactions with chain Q Metal complexes: R:Y.207, R:N.268, Q:D.146, Q:D.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sangita, V. et al., Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-10-18

Peptides

Coat protein: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

Coat protein

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