SMTL ID : 1x3z.1

Structure of a peptide:N-glycanase-Rad23 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VAL- ALA- ASP- CF0: peptide PHQ-Val-Ala-Asp-CF0(Non-covalent)

VAL-ALA-ASP-CF0.1: 8 residues within 4Å: Chain A: R.169, N.171, R.183, C.184, G.185, E.186, D.210 Ligands: GLC-FRU.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.169 Hydrogen bonds: A:R.169, A:G.185, A:D.210 Salt bridges: A:R.169, A:R.183

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.2: 6 residues within 4Å: Chain A: W.116, D.210, H.211, E.231, W.244 Ligands: VAL-ALA-ASP-CF0.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.211, A:E.231 GLC-FRU.3: 7 residues within 4Å: Chain A: K.110, E.231, Q.232, S.233, Q.236, I.239, N.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.110, A:E.231, A:E.231

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.122, C.125, C.158, C.161 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.122, A:C.125, A:C.158, A:C.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.H. et al., Structure of a peptide:N-glycanase-Rad23 complex: insight into the deglycosylation for denatured glycoproteins. Proc.Natl.Acad.Sci.Usa (2005)

Release Date

2005-06-14

Peptides

peptide: N-glycanase: A
UV excision repair protein RAD23: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

peptide: N-glycanase

UV excision repair protein RAD23

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