SMTL ID : 1x9p.3 (5 other biounits)

The crystal structure of human adenovirus 2 penton base

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-pentamer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.38, L.44, R.492 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.38 Salt bridges: A:R.492 SO4.4: 3 residues within 4Å: Chain B: N.38, L.44, R.492 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.38 Salt bridges: B:R.492 SO4.7: 3 residues within 4Å: Chain C: N.38, L.44, R.492 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.38 Salt bridges: C:R.492 SO4.10: 3 residues within 4Å: Chain D: N.38, L.44, R.492 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.38 Salt bridges: D:R.492 SO4.13: 3 residues within 4Å: Chain E: N.38, L.44, R.492 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.38 Salt bridges: E:R.492

10 x C15: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE(Non-covalent)

C15.2: 5 residues within 4Å: Chain A: R.98, W.117, R.224, T.226, D.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.226, A:D.228 Salt bridges: A:R.98 C15.3: 5 residues within 4Å: Chain A: K.215, G.222, F.223, R.224, W.374 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.224 Salt bridges: A:K.215 C15.5: 5 residues within 4Å: Chain B: R.98, W.117, R.224, T.226, D.228 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.226, B:D.228 Salt bridges: B:R.98 C15.6: 5 residues within 4Å: Chain B: K.215, G.222, F.223, R.224, W.374 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.224 Salt bridges: B:K.215 C15.8: 5 residues within 4Å: Chain C: R.98, W.117, R.224, T.226, D.228 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.226, C:D.228 Salt bridges: C:R.98 C15.9: 5 residues within 4Å: Chain C: K.215, G.222, F.223, R.224, W.374 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.224 Salt bridges: C:K.215 C15.11: 5 residues within 4Å: Chain D: R.98, W.117, R.224, T.226, D.228 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.226, D:D.228 Salt bridges: D:R.98 C15.12: 5 residues within 4Å: Chain D: K.215, G.222, F.223, R.224, W.374 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.224 Salt bridges: D:K.215 C15.14: 5 residues within 4Å: Chain E: R.98, W.117, R.224, T.226, D.228 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.226, E:D.228 Salt bridges: E:R.98 C15.15: 5 residues within 4Å: Chain E: K.215, G.222, F.223, R.224, W.374 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.224 Salt bridges: E:K.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zubieta, C. et al., The structure of the human adenovirus 2 penton. Mol.Cell (2005)

Release Date

2005-01-18

Peptides

Penton protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Penton protein

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