SMTL ID : 1x9t.2 (3 other biounits)

The crystal structure of human adenovirus 2 penton base in complex with an ad2 N-terminal fibre peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-5-5-mer

Ligands

10 x C15: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE(Non-covalent)

C15.1: 6 residues within 4Å: Chain A: K.215, G.222, F.223, R.224, W.374 Ligands: C15.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.224 Salt bridges: A:K.215 C15.2: 4 residues within 4Å: Chain A: R.98, W.117, R.224 Ligands: C15.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.117, A:T.226 Salt bridges: A:R.98, A:R.224 C15.3: 6 residues within 4Å: Chain C: K.215, G.222, F.223, R.224, W.374 Ligands: C15.4 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.224 Salt bridges: C:K.215 C15.4: 4 residues within 4Å: Chain C: R.98, W.117, R.224 Ligands: C15.3 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:W.117, C:T.226 Salt bridges: C:R.98, C:R.224 C15.5: 6 residues within 4Å: Chain E: K.215, G.222, F.223, R.224, W.374 Ligands: C15.6 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.224 Salt bridges: E:K.215 C15.6: 4 residues within 4Å: Chain E: R.98, W.117, R.224 Ligands: C15.5 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:W.117, E:T.226, E:T.226 Salt bridges: E:R.98, E:R.224 C15.7: 6 residues within 4Å: Chain G: K.215, G.222, F.223, R.224, W.374 Ligands: C15.8 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.224 Salt bridges: G:K.215 C15.8: 4 residues within 4Å: Chain G: R.98, W.117, R.224 Ligands: C15.7 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:W.117, G:T.226, G:T.226 Salt bridges: G:R.98, G:R.224 C15.9: 6 residues within 4Å: Chain I: K.215, G.222, F.223, R.224, W.374 Ligands: C15.10 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:R.224 Salt bridges: I:K.215 C15.10: 4 residues within 4Å: Chain I: R.98, W.117, R.224 Ligands: C15.9 5 PLIP interactions: 5 interactions with chain I Hydrogen bonds: I:W.117, I:T.226, I:T.226 Salt bridges: I:R.98, I:R.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zubieta, C. et al., The structure of the human adenovirus 2 penton. Mol.Cell (2005)

Release Date

2005-01-18

Peptides

Penton protein: ACEGI
N-terminal peptide of Fiber protein: BDFHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

B
B

D
B

F
B

H
B

J
B

Penton protein

N-terminal peptide of Fiber protein

Related Entries With Identical Sequence