SMTL ID : 1xio.2 (1 other biounit)

Anabaena sensory rhodopsin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x RET: RETINAL(Covalent)

RET.1: 14 residues within 4Å: Chain A: W.76, T.80, L.83, V.112, G.116, Y.132, G.135, V.136, F.139, W.176, Y.179, P.180, W.183, K.210 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.80, A:L.83, A:V.112, A:Y.132, A:F.139, A:W.176, A:W.176, A:Y.179, A:Y.179, A:Y.179, A:Y.179, A:Y.179, A:P.180, A:K.210 RET.15: 14 residues within 4Å: Chain B: W.76, T.80, L.83, V.112, G.116, Y.132, G.135, V.136, F.139, W.176, Y.179, P.180, W.183, K.210 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:T.80, B:L.83, B:V.112, B:Y.132, B:F.139, B:W.176, B:W.176, B:Y.179, B:Y.179, B:Y.179, B:Y.179, B:Y.179, B:P.180, B:K.210

26 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)(Non-functional Binders)

PEE.2: 6 residues within 4Å: Chain A: M.1, W.9, V.12, T.16 Ligands: PEE.7, PEE.8 Ligand excluded by PLIP PEE.3: 8 residues within 4Å: Chain A: I.10, I.17, Y.171, F.207, F.208, V.211, G.212, F.215 Ligand excluded by PLIP PEE.4: 2 residues within 4Å: Chain A: L.6 Ligands: PEE.8 Ligand excluded by PLIP PEE.5: 8 residues within 4Å: Chain A: R.124, W.126, L.130, W.131, C.134 Chain B: W.46, Y.70, I.74 Ligand excluded by PLIP PEE.6: 7 residues within 4Å: Chain A: Y.132, L.140, L.143, W.147, R.151, I.177, P.180 Ligand excluded by PLIP PEE.7: 2 residues within 4Å: Ligands: PEE.2, PEE.8 Ligand excluded by PLIP PEE.8: 3 residues within 4Å: Ligands: PEE.2, PEE.4, PEE.7 Ligand excluded by PLIP PEE.9: 9 residues within 4Å: Chain A: F.104, A.138, I.141, W.144, P.149 Chain B: W.99, T.100, S.107, I.110 Ligand excluded by PLIP PEE.10: 6 residues within 4Å: Chain B: M.77, P.81, L.82, W.99, M.106, I.110 Ligand excluded by PLIP PEE.11: 5 residues within 4Å: Chain A: C.134, C.137, I.141, W.144 Ligands: PEE.13 Ligand excluded by PLIP PEE.12: 8 residues within 4Å: Chain A: V.12, T.16, L.20, W.23, L.38, I.45, G.48, L.49 Ligand excluded by PLIP PEE.13: 4 residues within 4Å: Chain A: C.137, L.140, W.144 Ligands: PEE.11 Ligand excluded by PLIP PEE.14: 3 residues within 4Å: Chain B: L.38, F.42, V.78 Ligand excluded by PLIP PEE.16: 6 residues within 4Å: Chain B: M.1, W.9, V.12, T.16 Ligands: PEE.21, PEE.22 Ligand excluded by PLIP PEE.17: 8 residues within 4Å: Chain B: I.10, I.17, Y.171, F.207, F.208, V.211, G.212, F.215 Ligand excluded by PLIP PEE.18: 2 residues within 4Å: Chain B: L.6 Ligands: PEE.22 Ligand excluded by PLIP PEE.19: 8 residues within 4Å: Chain A: W.46, Y.70, I.74 Chain B: R.124, W.126, L.130, W.131, C.134 Ligand excluded by PLIP PEE.20: 7 residues within 4Å: Chain B: Y.132, L.140, L.143, W.147, R.151, I.177, P.180 Ligand excluded by PLIP PEE.21: 2 residues within 4Å: Ligands: PEE.16, PEE.22 Ligand excluded by PLIP PEE.22: 3 residues within 4Å: Ligands: PEE.16, PEE.18, PEE.21 Ligand excluded by PLIP PEE.23: 9 residues within 4Å: Chain A: W.99, T.100, S.107, I.110 Chain B: F.104, A.138, I.141, W.144, P.149 Ligand excluded by PLIP PEE.24: 6 residues within 4Å: Chain A: M.77, P.81, L.82, W.99, M.106, I.110 Ligand excluded by PLIP PEE.25: 5 residues within 4Å: Chain B: C.134, C.137, I.141, W.144 Ligands: PEE.27 Ligand excluded by PLIP PEE.26: 8 residues within 4Å: Chain B: V.12, T.16, L.20, W.23, L.38, I.45, G.48, L.49 Ligand excluded by PLIP PEE.27: 4 residues within 4Å: Chain B: C.137, L.140, W.144 Ligands: PEE.25 Ligand excluded by PLIP PEE.28: 3 residues within 4Å: Chain A: L.38, F.42, V.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogeley, L. et al., Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A. Science (2004)

Release Date

2004-10-05

Peptides

ANABAENA SENSORY RHODOPSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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ANABAENA SENSORY RHODOPSIN

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