SMTL ID : 1xl7.2 (1 other biounit)

Crystal Structure of Mouse Carnitine Octanoyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 10 residues within 4Å: Chain A: W.85, Y.90, H.327, D.331, Y.439, T.441, T.452, M.558 Ligands: MPD.2, MPD.7 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.90, A:Y.90, A:D.331, A:Y.439, A:T.441 Water bridges: A:R.451 Salt bridges: A:H.327

7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 10 residues within 4Å: Chain A: F.103, H.327, A.332, T.441, T.543, S.544, G.553, V.554, F.566 Ligands: EPE.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.103, A:A.332, A:F.566, A:F.566 Hydrogen bonds: A:T.543, A:S.544 Water bridges: A:A.332 MPD.3: 5 residues within 4Å: Chain A: H.191, F.203, D.204, K.268, E.366 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.191, A:D.204 Hydrogen bonds: A:K.268 Water bridges: A:K.268, A:E.366 MPD.4: 2 residues within 4Å: Chain A: S.19, P.153 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.153 MPD.5: 5 residues within 4Å: Chain A: K.33, E.52, V.55, Q.56, Q.59 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.33, A:E.52 MPD.6: 3 residues within 4Å: Chain A: L.71, A.74, R.75 No protein-ligand interaction detected (PLIP) MPD.7: 7 residues within 4Å: Chain A: V.88, A.89, Y.439, L.508, G.536, G.537 Ligands: EPE.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.88, A:Y.439, A:L.508 MPD.8: 7 residues within 4Å: Chain A: E.123, S.126, M.127, P.214, P.215, L.218, W.353 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.214, A:P.215, A:L.218 Water bridges: A:W.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jogl, G. et al., Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity. J.Biol.Chem. (2005)

Release Date

2004-10-19

Peptides

Peroxisomal carnitine O-octanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisomal carnitine O-octanoyltransferase

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