SMTL ID : 1xl8.2 (1 other biounit)

Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x OCB: OCTANOYLCARNITINE(Non-covalent)

OCB.1: 22 residues within 4Å: Chain A: W.85, Y.90, F.103, V.104, G.105, H.327, A.332, M.335, V.336, Y.439, T.441, T.452, S.542, T.543, S.544, V.546, Q.552, G.553, V.555, M.558, F.566 Ligands: MPD.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.103, A:F.103, A:A.332, A:V.336, A:V.546, A:V.555, A:F.566 Hydrogen bonds: A:Y.90, A:Y.90, A:Y.439, A:S.544 Salt bridges: A:H.327, A:R.505 pi-Cation interactions: A:Y.439

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: H.191, V.202, D.204, K.268, E.366 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.191, A:D.204 Hydrogen bonds: A:K.268 MPD.3: 6 residues within 4Å: Chain A: K.33, L.36, E.52, V.55, Q.56, Q.59 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.36, A:E.52 MPD.4: 2 residues within 4Å: Chain A: L.71, R.75 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.75 MPD.5: 4 residues within 4Å: Chain A: W.85, Y.439, G.537 Ligands: OCB.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.85, A:Y.439 MPD.6: 7 residues within 4Å: Chain A: E.123, S.126, M.127, P.215, L.218, W.353, E.357 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.215 Hydrogen bonds: A:W.353, A:E.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jogl, G. et al., Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity. J.Biol.Chem. (2005)

Release Date

2004-10-19

Peptides

Peroxisomal carnitine O-octanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisomal carnitine O-octanoyltransferase

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