SMTL ID : 1xs7.1

Crystal Structure of a cycloamide-urethane-derived novel inhibitor bound to human brain memapsin 2 (beta-secretase).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MMI: N-[(4S,5S,7R)-8-({(S)-1-[(BENZYLAMINO)OXOMETHYL]-2-METHYLPROPYL}AMINO)-5-HYDROXY-2,7-DIMETHYL-8-OXO-OCT-4-YL]-(4S,7S)-4 -ISOPROPYL-2,5,9-TRIOXO-1-OXA-3,6,10-TRIAZACYCLOHEXADECANE-7-CARBOXAMIDE(Non-covalent)

MMI.1: 18 residues within 4Å: Chain A: D.36, G.38, S.39, Y.75, T.76, Q.77, F.112, I.114, W.119, I.130, R.132, Y.202, D.232, G.234, T.235, T.236, N.237, R.239 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.75, A:Y.75, A:T.76, A:F.112, A:I.114, A:W.119, A:N.237 Hydrogen bonds: A:G.38, A:T.76, A:T.76, A:Q.77, A:Q.77, A:Y.202, A:G.234, A:G.234, A:T.235, A:T.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A.K. et al., Structure-based design of cycloamide-urethane-derived novel inhibitors of human brain memapsin 2 (beta-secretase). Bioorg.Med.Chem.Lett. (2005)

Release Date

2004-12-21

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Beta-secretase 1

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