SMTL ID : 1xxi.2 (1 other biounit)

ADP Bound E. coli Clamp Loader Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

hetero-1-3-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: C.64, C.73, G.74, C.76, C.79 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.64, B:C.73, B:C.76, B:C.79 ZN.2: 4 residues within 4Å: Chain C: C.64, C.73, C.76, C.79 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:C.64, C:C.73, C:C.73, C:C.76, C:C.79 ZN.3: 5 residues within 4Å: Chain D: C.64, C.73, G.74, C.76, C.79 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.64, D:C.73, D:C.76, D:C.79 ZN.5: 6 residues within 4Å: Chain E: C.50, Q.51, S.58, C.59, C.62, C.65 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.50, E:C.59, E:C.62, E:C.65

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 18 residues within 4Å: Chain D: A.7, W.10, R.11, P.12, D.17, V.18, V.19, T.46, R.47, G.48, V.49, G.50, K.51, T.52, S.53, L.214, R.215, L.218 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:A.7, D:R.11, D:R.11, D:V.19, D:T.46, D:G.48, D:V.49, D:V.49, D:G.50, D:K.51, D:T.52, D:T.52, D:T.52, D:S.53 Salt bridges: D:R.11, D:K.51, D:R.215, D:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kazmirski, S.L. et al., Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex. Proc.Natl.Acad.Sci.USA (2004)

Release Date

2004-12-07

Peptides

DNA polymerase III, delta subunit: A
DNA polymerase III subunit gamma: BCD
DNA polymerase III, delta prime subunit: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

DNA polymerase III, delta subunit

DNA polymerase III subunit gamma

DNA polymerase III, delta prime subunit

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