SMTL ID : 1y5r.2 (1 other biounit)

The crystal structure of murine 11b-hydroxysteroid dehydrogenase complexed with corticosterone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 31 residues within 4Å: Chain A: G.25, A.26, S.27, K.28, G.29, I.30, A.49, R.50, S.51, G.75, T.76, M.77, E.78, N.103, H.104, I.105, T.106, Y.131, I.152, S.153, S.154, Y.167, K.171, L.199, G.200, L.201, I.202, T.204, T.206, A.207 Ligands: C0R.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.199, A:I.202 Hydrogen bonds: A:G.25, A:S.27, A:S.27, A:S.27, A:K.28, A:I.30, A:R.50, A:S.51, A:T.76, A:M.77, A:I.105, A:Y.131, A:Y.167, A:K.171, A:K.171, A:K.171, A:I.202, A:I.202, A:T.204, A:T.206 Salt bridges: A:K.28, A:R.50 NDP.3: 30 residues within 4Å: Chain B: G.25, A.26, S.27, K.28, G.29, I.30, A.49, R.50, S.51, G.75, T.76, M.77, E.78, N.103, H.104, I.105, Y.131, I.152, S.153, S.154, Y.167, K.171, L.199, G.200, L.201, I.202, T.204, T.206, A.207 Ligands: C0R.4 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.199, B:I.202 Hydrogen bonds: B:G.25, B:S.27, B:S.27, B:S.27, B:K.28, B:G.29, B:I.30, B:R.50, B:S.51, B:T.76, B:T.76, B:M.77, B:I.105, B:K.171, B:K.171, B:K.171, B:I.202, B:I.202 Salt bridges: B:K.28, B:K.28, B:R.50 NDP.5: 31 residues within 4Å: Chain C: G.25, A.26, S.27, K.28, G.29, I.30, A.49, R.50, S.51, G.75, T.76, M.77, E.78, N.103, H.104, I.105, T.106, Y.131, I.152, S.153, S.154, Y.167, K.171, L.199, G.200, L.201, I.202, T.204, T.206, A.207 Ligands: C0R.6 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:L.199, C:I.202 Hydrogen bonds: C:G.25, C:S.27, C:S.27, C:S.27, C:K.28, C:I.30, C:R.50, C:S.51, C:T.76, C:T.76, C:M.77, C:I.105, C:K.171, C:K.171, C:K.171, C:I.202, C:I.202 Salt bridges: C:K.28, C:R.50 NDP.7: 30 residues within 4Å: Chain D: G.25, A.26, S.27, K.28, G.29, I.30, A.49, R.50, S.51, G.75, T.76, M.77, E.78, N.103, H.104, I.105, Y.131, I.152, S.153, S.154, Y.167, K.171, L.199, G.200, L.201, I.202, T.204, T.206, A.207 Ligands: C0R.8 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:L.199, D:I.202 Hydrogen bonds: D:G.25, D:S.27, D:S.27, D:S.27, D:K.28, D:G.29, D:I.30, D:R.50, D:S.51, D:T.76, D:M.77, D:I.105, D:Y.131, D:Y.167, D:K.171, D:K.171, D:K.171, D:I.202, D:I.202, D:T.204, D:T.206 Salt bridges: D:K.28, D:K.28, D:R.50

4 x C0R: CORTICOSTERONE(Non-covalent)

C0R.2: 16 residues within 4Å: Chain A: I.105, T.108, L.110, S.154, L.155, A.156, Q.161, I.164, Y.167, L.201, T.206, A.207, E.210, I.211, I.215 Ligands: NDP.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.110, A:L.155, A:A.156, A:I.164, A:Y.167, A:E.210, A:I.211, A:I.215 Hydrogen bonds: A:S.154, A:S.154, A:L.201 C0R.4: 16 residues within 4Å: Chain B: I.105, T.108, L.110, S.154, L.155, A.156, Q.161, I.164, Y.167, L.201, T.206, A.207, E.210, I.211, I.215 Ligands: NDP.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.110, B:L.155, B:A.156, B:I.164, B:Y.167, B:E.210, B:I.211, B:I.215 Hydrogen bonds: B:S.154, B:S.154, B:Y.167, B:L.201 C0R.6: 16 residues within 4Å: Chain C: I.105, T.108, L.110, S.154, L.155, A.156, Q.161, I.164, Y.167, L.201, T.206, A.207, E.210, I.211, I.215 Ligands: NDP.5 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:L.110, C:L.155, C:A.156, C:I.164, C:Y.167, C:E.210, C:I.211, C:I.215 Hydrogen bonds: C:S.154, C:S.154, C:Y.167, C:L.201, C:T.206 C0R.8: 16 residues within 4Å: Chain D: I.105, T.108, L.110, S.154, L.155, A.156, Q.161, I.164, Y.167, L.201, T.206, A.207, E.210, I.211, I.215 Ligands: NDP.7 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:L.110, D:L.155, D:A.156, D:I.164, D:Y.167, D:E.210, D:I.211, D:I.215 Hydrogen bonds: D:S.154, D:S.154, D:L.201

Links

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Citation

Zhang, J. et al., Crystal Structure of Murine 11-Hydroxysteroid Dehydrogenase 1: An Important Therapeutic Target for Diabetes. Biochemistry (2005)

Release Date

2005-05-17

Peptides

Corticosteroid 11-beta-dehydrogenase, isozyme 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Corticosteroid 11-beta-dehydrogenase, isozyme 1

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