SMTL ID : 5qij.1

CRYSTAL STRUCTURE OF MURINE 11B- HYDROXYSTEROIDDEHYDROGENASE COMPLEXED WITH 2-(3-(1-(4- CHLOROPHENYL)CYCLOPROPYL)-[1,2,4]TRIAZOLO[4,3-A]PYRIDIN-8- YL)PROPAN-2-OL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.25, A.26, S.27, K.28, G.29, I.30, A.49, R.50, S.51, G.75, T.76, M.77, E.78, N.103, H.104, I.105, Y.131, I.152, S.153, S.154, Y.167, K.171, L.199, G.200, L.201, I.202, T.204, T.206, A.207 Ligands: HJG.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.199 Hydrogen bonds: A:G.25, A:S.27, A:S.27, A:S.27, A:K.28, A:I.30, A:R.50, A:S.51, A:T.76, A:M.77, A:I.105, A:Y.131, A:I.152, A:Y.167, A:K.171, A:I.202, A:T.204, A:T.204, A:T.206 Salt bridges: A:K.28, A:R.50 NAP.8: 30 residues within 4Å: Chain B: G.25, A.26, S.27, K.28, G.29, I.30, A.49, R.50, S.51, G.75, T.76, M.77, E.78, N.103, H.104, I.105, Y.131, I.152, S.153, S.154, Y.167, K.171, L.199, G.200, L.201, I.202, T.204, T.206, A.207 Ligands: HJG.9 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:L.199 Hydrogen bonds: B:G.25, B:S.27, B:S.27, B:S.27, B:K.28, B:I.30, B:R.50, B:S.51, B:T.76, B:M.77, B:I.105, B:I.152, B:K.171, B:I.202, B:T.204 Water bridges: B:Q.107, B:Y.167, B:T.206 Salt bridges: B:K.28, B:R.50

4 x HJG: 2-{3-[1-(4-chlorophenyl)cyclopropyl][1,2,4]triazolo[4,3-a]pyridin-8-yl}propan-2-ol(Non-covalent)

HJG.2: 19 residues within 4Å: Chain A: T.108, S.109, L.110, S.154, L.155, A.156, Q.161, I.164, Y.167, L.199, G.200, L.201, A.207, E.210, I.211, I.215 Chain B: Y.268 Ligands: NAP.1, HJG.7 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.110, A:L.155, A:L.155, A:A.156, A:I.164, A:Y.167, A:Y.167, A:L.201, A:A.207, A:E.210, A:I.211, A:I.215 Hydrogen bonds: A:A.156, A:Q.161 HJG.7: 17 residues within 4Å: Chain A: L.155, M.159, Q.161, L.201, I.215, A.217, D.243, S.245, L.247, T.248, L.251 Chain B: M.260, F.263, S.264, Y.267, Y.268 Ligands: HJG.2 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.263, B:Y.267, A:L.155, A:L.251 HJG.9: 18 residues within 4Å: Chain A: Y.268 Chain B: T.108, S.109, L.110, S.154, L.155, A.156, I.164, Y.167, L.199, G.200, L.201, A.207, E.210, I.211, I.215 Ligands: NAP.8, HJG.10 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.110, B:L.155, B:L.155, B:A.156, B:I.164, B:Y.167, B:Y.167, B:L.201, B:A.207, B:E.210, B:I.211, B:I.215 Hydrogen bonds: B:A.156, B:Y.167 HJG.10: 17 residues within 4Å: Chain A: M.260, F.263, S.264, Y.267, Y.268 Chain B: L.155, M.159, Q.161, L.201, I.215, A.217, D.243, S.245, L.247, T.248, L.251 Ligands: HJG.9 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.263, A:Y.267, B:L.155, B:Q.161, B:L.251 Hydrogen bonds: B:Q.161

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: K.28, G.29, R.32, T.204, E.205, K.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.29, A:E.205 Water bridges: A:R.32 Salt bridges: A:R.32, A:K.222 SO4.4: 2 residues within 4Å: Chain A: R.50, Q.107 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.50 SO4.5: 3 residues within 4Å: Chain A: K.237, S.238, E.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.238, A:S.238, A:E.239 Water bridges: A:S.238, A:S.238 SO4.6: 1 residues within 4Å: Chain A: R.32 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.32 SO4.11: 6 residues within 4Å: Chain B: K.28, G.29, R.32, T.204, E.205, K.222 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.29, B:E.205 Water bridges: B:R.32, B:T.206, B:T.206 Salt bridges: B:R.32, B:K.222 SO4.12: 2 residues within 4Å: Chain B: R.50, Q.107 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.106 Salt bridges: B:R.50 SO4.13: 3 residues within 4Å: Chain B: K.237, S.238, E.239 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.238, B:E.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Discovery of Clinical Candidate BMS-823778 as an Inhibitor of Human 11 beta-Hydroxysteroid Dehydrogenase Type 1 (11 beta-HSD-1). ACS Med Chem Lett (2018)

Release Date

2018-12-19

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Corticosteroid 11-beta-dehydrogenase isozyme 1

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