- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-octamer
- Ligands
- 28 x ZN: ZINC ION(Non-covalent)
- 8 x FEO: MU-OXO-DIIRON(Non-covalent)(Covalent)
FEO.5: 9 residues within 4Å:- Chain A: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.6
8 PLIP interactions:8 interactions with chain A,- Metal complexes: A:H.80, A:E.82, A:D.84, A:H.85, A:H.147, A:D.166, A:D.166, A:H.227
FEO.12: 9 residues within 4Å:- Chain B: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.13
8 PLIP interactions:8 interactions with chain B,- Metal complexes: B:H.80, B:E.82, B:D.84, B:H.85, B:H.147, B:D.166, B:D.166, B:H.227
FEO.19: 9 residues within 4Å:- Chain C: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.20
8 PLIP interactions:8 interactions with chain C,- Metal complexes: C:H.80, C:E.82, C:D.84, C:H.85, C:H.147, C:D.166, C:D.166, C:H.227
FEO.26: 9 residues within 4Å:- Chain D: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.27
8 PLIP interactions:8 interactions with chain D,- Metal complexes: D:H.80, D:E.82, D:D.84, D:H.85, D:H.147, D:D.166, D:D.166, D:H.227
FEO.32: 9 residues within 4Å:- Chain E: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.33
8 PLIP interactions:8 interactions with chain E,- Metal complexes: E:H.80, E:E.82, E:D.84, E:H.85, E:H.147, E:D.166, E:D.166, E:H.227
FEO.38: 9 residues within 4Å:- Chain F: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.39
8 PLIP interactions:8 interactions with chain F,- Metal complexes: F:H.80, F:E.82, F:D.84, F:H.85, F:H.147, F:D.166, F:D.166, F:H.227
FEO.44: 9 residues within 4Å:- Chain G: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.45
8 PLIP interactions:8 interactions with chain G,- Metal complexes: G:H.80, G:E.82, G:D.84, G:H.85, G:H.147, G:D.166, G:D.166, G:H.227
FEO.50: 9 residues within 4Å:- Chain H: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.51
8 PLIP interactions:8 interactions with chain H,- Metal complexes: H:H.80, H:E.82, H:D.84, H:H.85, H:H.147, H:D.166, H:D.166, H:H.227
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 8 residues within 4Å:- Chain A: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.166
EDO.13: 8 residues within 4Å:- Chain B: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.166
EDO.20: 8 residues within 4Å:- Chain C: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.19
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.166
EDO.27: 8 residues within 4Å:- Chain D: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.26
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.166
EDO.33: 7 residues within 4Å:- Chain E: F.23, H.24, E.82, D.84, H.147, H.227
- Ligands: FEO.32
No protein-ligand interaction detected (PLIP)EDO.39: 9 residues within 4Å:- Chain E: W.262
- Chain F: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.38
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:D.166
EDO.45: 7 residues within 4Å:- Chain G: F.23, H.24, E.82, D.84, H.147, H.227
- Ligands: FEO.44
No protein-ligand interaction detected (PLIP)EDO.51: 9 residues within 4Å:- Chain G: W.262
- Chain H: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.50
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:D.166
- 8 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.7: 22 residues within 4Å:- Chain A: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
- Chain B: H.24, E.82, H.147, W.148
23 PLIP interactions:21 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.313, B:W.148
- Hydrogen bonds: A:M.261, A:W.262, A:L.263, A:S.264, A:S.264, A:T.265, A:T.312, A:T.312, A:T.312, A:N.314, A:N.315, A:Y.344, A:G.345, A:W.346, A:G.347, A:G.348
- Water bridges: A:S.264, A:S.264
- pi-Stacking: A:W.346, A:W.346, B:W.148
FMN.14: 22 residues within 4Å:- Chain A: H.24, E.82, H.147, W.148
- Chain B: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
25 PLIP interactions:23 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:I.313, A:W.148
- Hydrogen bonds: B:M.261, B:W.262, B:L.263, B:S.264, B:S.264, B:S.264, B:T.265, B:T.265, B:T.312, B:T.312, B:T.312, B:N.314, B:N.315, B:N.315, B:Y.344, B:G.345, B:W.346, B:G.347, B:G.348, B:W.375
- pi-Stacking: B:W.346, B:W.346, A:W.148
FMN.21: 22 residues within 4Å:- Chain C: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
- Chain D: H.24, E.82, H.147, W.148
24 PLIP interactions:22 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:I.313, D:W.148
- Hydrogen bonds: C:M.261, C:W.262, C:L.263, C:S.264, C:S.264, C:T.265, C:T.265, C:T.312, C:T.312, C:T.312, C:N.314, C:N.315, C:Y.344, C:G.345, C:W.346, C:G.347, C:G.348
- Water bridges: C:S.264, C:S.264
- pi-Stacking: C:W.346, C:W.346, D:W.148
FMN.28: 22 residues within 4Å:- Chain C: H.24, E.82, H.147, W.148
- Chain D: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
25 PLIP interactions:23 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:I.313, C:W.148
- Hydrogen bonds: D:T.260, D:M.261, D:W.262, D:L.263, D:S.264, D:S.264, D:S.264, D:T.265, D:T.312, D:T.312, D:T.312, D:N.314, D:N.315, D:N.315, D:Y.344, D:G.345, D:W.346, D:G.347, D:G.348, D:W.375
- pi-Stacking: D:W.346, D:W.346, C:W.148
FMN.34: 22 residues within 4Å:- Chain E: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
- Chain F: H.24, E.82, H.147, W.148
24 PLIP interactions:22 interactions with chain E, 2 interactions with chain F- Hydrophobic interactions: E:I.313, E:I.313, F:W.148
- Hydrogen bonds: E:M.261, E:W.262, E:L.263, E:S.264, E:S.264, E:T.265, E:T.312, E:T.312, E:N.314, E:N.315, E:Y.344, E:G.345, E:W.346, E:G.347, E:G.348
- Water bridges: E:S.264, E:S.264
- pi-Stacking: E:W.346, E:W.346, E:W.346, F:W.148
FMN.40: 22 residues within 4Å:- Chain E: H.24, E.82, H.147, W.148
- Chain F: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
24 PLIP interactions:22 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:I.313, E:W.148
- Hydrogen bonds: F:M.261, F:W.262, F:L.263, F:S.264, F:S.264, F:T.265, F:T.265, F:T.312, F:T.312, F:N.314, F:N.315, F:Y.344, F:G.345, F:W.346, F:G.347, F:G.348, F:W.375
- Water bridges: F:S.264, F:S.264
- pi-Stacking: F:W.346, F:W.346, E:W.148
FMN.46: 22 residues within 4Å:- Chain G: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
- Chain H: H.24, E.82, H.147, W.148
25 PLIP interactions:23 interactions with chain G, 2 interactions with chain H- Hydrophobic interactions: G:I.313, G:I.313, H:W.148
- Hydrogen bonds: G:M.261, G:W.262, G:L.263, G:S.264, G:S.264, G:T.265, G:T.265, G:T.312, G:T.312, G:N.314, G:N.315, G:Y.344, G:G.345, G:W.346, G:G.347, G:G.348
- Water bridges: G:S.264, G:S.264
- pi-Stacking: G:W.346, G:W.346, G:W.346, H:W.148
FMN.52: 22 residues within 4Å:- Chain G: H.24, E.82, H.147, W.148
- Chain H: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
24 PLIP interactions:22 interactions with chain H, 2 interactions with chain G- Hydrophobic interactions: H:I.313, G:W.148
- Hydrogen bonds: H:M.261, H:W.262, H:L.263, H:S.264, H:S.264, H:T.265, H:T.312, H:T.312, H:T.312, H:N.314, H:N.315, H:Y.344, H:G.345, H:W.346, H:G.347, H:G.348, H:W.375
- Water bridges: H:S.264, H:S.264
- pi-Stacking: H:W.346, H:W.346, G:W.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Silaghi-Dumitrescu, R. et al., X-ray crystal structures of Moorella thermoacetica FprA. Novel diiron site structure and mechanistic insights into a scavenging nitric oxide reductase. Biochemistry (2005)
- Release Date
- 2005-04-19
- Peptides
- Nitric oxide reductase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-octamer
- Ligands
- 28 x ZN: ZINC ION(Non-covalent)
- 8 x FEO: MU-OXO-DIIRON(Non-covalent)(Covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Silaghi-Dumitrescu, R. et al., X-ray crystal structures of Moorella thermoacetica FprA. Novel diiron site structure and mechanistic insights into a scavenging nitric oxide reductase. Biochemistry (2005)
- Release Date
- 2005-04-19
- Peptides
- Nitric oxide reductase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D