- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 14 x ZN: ZINC ION(Non-covalent)
- 4 x FEO: MU-OXO-DIIRON(Non-covalent)(Covalent)
FEO.5: 9 residues within 4Å:- Chain A: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.6
8 PLIP interactions:8 interactions with chain A,- Metal complexes: A:H.80, A:E.82, A:D.84, A:H.85, A:H.147, A:D.166, A:D.166, A:H.227
FEO.12: 9 residues within 4Å:- Chain B: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.13
8 PLIP interactions:8 interactions with chain B,- Metal complexes: B:H.80, B:E.82, B:D.84, B:H.85, B:H.147, B:D.166, B:D.166, B:H.227
FEO.18: 9 residues within 4Å:- Chain C: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.19
8 PLIP interactions:8 interactions with chain C,- Metal complexes: C:H.80, C:E.82, C:D.84, C:H.85, C:H.147, C:D.166, C:D.166, C:H.227
FEO.24: 9 residues within 4Å:- Chain D: H.80, E.82, D.84, H.85, H.147, D.166, S.226, H.227
- Ligands: EDO.25
8 PLIP interactions:8 interactions with chain D,- Metal complexes: D:H.80, D:E.82, D:D.84, D:H.85, D:H.147, D:D.166, D:D.166, D:H.227
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 8 residues within 4Å:- Chain A: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.166
EDO.13: 8 residues within 4Å:- Chain B: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.166
EDO.19: 7 residues within 4Å:- Chain C: F.23, H.24, E.82, D.84, H.147, H.227
- Ligands: FEO.18
No protein-ligand interaction detected (PLIP)EDO.25: 9 residues within 4Å:- Chain C: W.262
- Chain D: F.23, H.24, E.82, D.84, H.147, D.166, H.227
- Ligands: FEO.24
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.166
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.7: 22 residues within 4Å:- Chain A: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
- Chain B: H.24, E.82, H.147, W.148
23 PLIP interactions:21 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.313, B:W.148
- Hydrogen bonds: A:M.261, A:W.262, A:L.263, A:S.264, A:S.264, A:T.265, A:T.312, A:T.312, A:T.312, A:N.314, A:N.315, A:Y.344, A:G.345, A:W.346, A:G.347, A:G.348
- Water bridges: A:S.264, A:S.264
- pi-Stacking: A:W.346, A:W.346, B:W.148
FMN.14: 22 residues within 4Å:- Chain A: H.24, E.82, H.147, W.148
- Chain B: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
25 PLIP interactions:23 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:I.313, A:W.148
- Hydrogen bonds: B:M.261, B:W.262, B:L.263, B:S.264, B:S.264, B:S.264, B:T.265, B:T.265, B:T.312, B:T.312, B:T.312, B:N.314, B:N.315, B:N.315, B:Y.344, B:G.345, B:W.346, B:G.347, B:G.348, B:W.375
- pi-Stacking: B:W.346, B:W.346, A:W.148
FMN.20: 22 residues within 4Å:- Chain C: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
- Chain D: H.24, E.82, H.147, W.148
24 PLIP interactions:22 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:I.313, C:I.313, D:W.148
- Hydrogen bonds: C:M.261, C:W.262, C:L.263, C:S.264, C:S.264, C:T.265, C:T.312, C:T.312, C:N.314, C:N.315, C:Y.344, C:G.345, C:W.346, C:G.347, C:G.348
- Water bridges: C:S.264, C:S.264
- pi-Stacking: C:W.346, C:W.346, C:W.346, D:W.148
FMN.26: 22 residues within 4Å:- Chain C: H.24, E.82, H.147, W.148
- Chain D: T.260, M.261, W.262, L.263, S.264, T.265, P.311, T.312, I.313, N.314, N.315, A.343, Y.344, G.345, W.346, G.347, G.348, W.375
24 PLIP interactions:22 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:I.313, C:W.148
- Hydrogen bonds: D:M.261, D:W.262, D:L.263, D:S.264, D:S.264, D:T.265, D:T.265, D:T.312, D:T.312, D:N.314, D:N.315, D:Y.344, D:G.345, D:W.346, D:G.347, D:G.348, D:W.375
- Water bridges: D:S.264, D:S.264
- pi-Stacking: D:W.346, D:W.346, C:W.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Silaghi-Dumitrescu, R. et al., X-ray crystal structures of Moorella thermoacetica FprA. Novel diiron site structure and mechanistic insights into a scavenging nitric oxide reductase. Biochemistry (2005)
- Release Date
- 2005-04-19
- Peptides
- Nitric oxide reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 14 x ZN: ZINC ION(Non-covalent)
- 4 x FEO: MU-OXO-DIIRON(Non-covalent)(Covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Silaghi-Dumitrescu, R. et al., X-ray crystal structures of Moorella thermoacetica FprA. Novel diiron site structure and mechanistic insights into a scavenging nitric oxide reductase. Biochemistry (2005)
- Release Date
- 2005-04-19
- Peptides
- Nitric oxide reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D