SMTL ID : 1yea.1

STRUCTURE DETERMINATION AND ANALYSIS OF YEAST ISO-2-CYTOCHROME C AND A COMPOSITE MUTANT PROTEIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.10, S.11, A.12, K.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.12, A:K.13 Water bridges: A:G.10, A:K.13 Salt bridges: A:K.13 SO4.3: 4 residues within 4Å: Chain B: G.10, S.11, A.12, K.13 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.12, B:K.13 Water bridges: B:G.10, B:K.13 Salt bridges: B:K.13

2 x HEC: HEME C(Covalent)

HEC.2: 26 residues within 4Å: Chain A: R.22, C.23, Q.25, C.26, H.27, V.37, G.38, P.39, L.41, I.44, S.49, G.50, Y.55, Y.57, T.58, N.61, W.68, M.73, Y.76, T.87, K.88, M.89, A.90, F.91, L.103, M.107 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:R.22, A:V.37, A:L.41, A:I.44, A:Y.76, A:K.88, A:M.89, A:F.91, A:L.103 Hydrogen bonds: A:G.50, A:Y.57, A:T.58, A:N.61, A:T.87, A:K.88 Water bridges: A:Q.51, A:V.52, A:T.87 pi-Stacking: A:Y.76 Metal complexes: A:H.27 HEC.4: 26 residues within 4Å: Chain B: R.22, C.23, Q.25, C.26, H.27, V.37, G.38, P.39, L.41, I.44, S.49, G.50, Y.55, Y.57, T.58, N.61, W.68, M.73, Y.76, T.87, K.88, M.89, A.90, F.91, L.103, M.107 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:R.22, B:V.37, B:L.41, B:I.44, B:Y.76, B:K.88, B:M.89, B:F.91, B:L.103 Hydrogen bonds: B:G.50, B:T.58, B:N.61, B:T.87, B:T.87, B:K.88 Water bridges: B:Q.51, B:V.52 pi-Stacking: B:Y.76 Metal complexes: B:H.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy, M.E. et al., Structure determination and analysis of yeast iso-2-cytochrome c and a composite mutant protein. J.Mol.Biol. (1992)

Release Date

1993-10-31

Peptides

CYTOCHROME C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CYTOCHROME C

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