SMTL ID : 3cxh.1

Structure of yeast complex III with isoform-2 cytochrome c bound and definition of a minimal core interface for electron transfer.

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-1-mer
Ligands
1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)
2 x UMQ: UNDECYL-MALTOSIDE(Non-covalent)
7 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
2 x SMA: STIGMATELLIN A(Non-covalent)
2 x 8PE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate(Non-covalent)
2 x CN6: (2R,5R,11S,14R)-2-(butanoyloxy)-5,8,11-trihydroxy-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate(Non-covalent)
2 x 9PE: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate(Non-covalent)
2 x 7PH: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
2 x 6PH: (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Solmaz, S.R. et al., Structure of complex III with bound cytochrome c in reduced state and definition of a minimal core interface for electron transfer. J.Biol.Chem. (2008)
Release Date
2008-05-13
Peptides
Cytochrome b-c1 complex subunit 1, mitochondrial: AL
Cytochrome b-c1 complex subunit 2, mitochondrial: BM
Cytochrome b: CN
Cytochrome c1, heme protein, mitochondrial: DO
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EP
Cytochrome b-c1 complex subunit 6: FQ
Cytochrome b-c1 complex subunit 7: GR
Cytochrome b-c1 complex subunit 8: HS
Cytochrome b-c1 complex subunit 9: IT
HEAVY CHAIN (VH) OF FV-FRAGMENT: JU
LIGHT CHAIN (VL) OF FV-FRAGMENT: KV
Cytochrome c iso-2: W
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
L
L
B
B
M
M
C
C
N
N
D
D
O
O
E
E
P
P
F
F
Q
Q
G
G
R
R
H
H
S
S
I
I
T
T
J
J
U
U
K
K
V
V
W
W
Membrane
We predict this structure to be a membrane protein.

Cytochrome b-c1 complex subunit 1, mitochondrial

Toggle Identical (AL)

Cytochrome b-c1 complex subunit 2, mitochondrial

Toggle Identical (BM)

Cytochrome b

Toggle Identical (CN)

Cytochrome c1, heme protein, mitochondrial

Toggle Identical (DO)

Cytochrome b-c1 complex subunit Rieske, mitochondrial

Toggle Identical (EP)

Cytochrome b-c1 complex subunit 6

Toggle Identical (FQ)

Cytochrome b-c1 complex subunit 7

Toggle Identical (GR)

Cytochrome b-c1 complex subunit 8

Toggle Identical (HS)

Cytochrome b-c1 complex subunit 9

Toggle Identical (IT)

HEAVY CHAIN (VH) OF FV-FRAGMENT

Toggle Identical (JU)

LIGHT CHAIN (VL) OF FV-FRAGMENT

Toggle Identical (KV)

Cytochrome c iso-2

Related Entries With Identical Sequence

1ezv.1 | 1kb9.1 | 1kyo.1 | 1p84.1 | 1p84.2 | 1yea.1 | 2ibz.1 | 3cx5.1 | 4pd4.1 | 6giq.1 | 6hu9.1 | 6t0b.1 | 6t15.1 | 6ymx.1