SMTL ID : 1yg6.1

ClpP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-14-mer

Ligands

14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: S.97, M.98, F.101, I.121, H.122, M.153, T.168 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.101, A:T.168 Hydrogen bonds: A:S.97, A:H.122 MPD.2: 6 residues within 4Å: Chain B: S.97, M.98, F.101, H.122, M.149, M.153 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.101 Hydrogen bonds: B:H.122, B:H.122 MPD.3: 6 residues within 4Å: Chain C: S.97, M.98, F.101, I.121, H.122, M.149 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.101, C:I.121 Hydrogen bonds: C:H.122, C:H.122 MPD.4: 5 residues within 4Å: Chain D: S.97, M.98, H.122, Q.123, M.149 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:M.149 Hydrogen bonds: D:Q.123 MPD.5: 6 residues within 4Å: Chain E: S.97, M.98, I.121, H.122, M.149, M.153 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:I.121, E:M.149 Hydrogen bonds: E:H.122, E:H.122, E:H.122 MPD.6: 8 residues within 4Å: Chain F: S.97, M.98, F.101, I.121, H.122, M.149, M.153, T.168 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:F.101, F:T.168 Hydrogen bonds: F:S.97, F:H.122 MPD.7: 6 residues within 4Å: Chain G: S.97, M.98, F.101, I.121, H.122, M.149 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:I.121 Hydrogen bonds: G:H.122, G:H.122, G:H.122 MPD.8: 7 residues within 4Å: Chain H: S.97, M.98, F.101, I.121, H.122, M.149, M.153 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:I.121 Hydrogen bonds: H:S.97, H:H.122 MPD.9: 7 residues within 4Å: Chain I: S.97, M.98, F.101, I.121, H.122, M.149, M.153 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:I.121, I:M.149 Hydrogen bonds: I:S.97, I:H.122 MPD.10: 8 residues within 4Å: Chain J: I.70, S.97, M.98, F.101, I.121, H.122, M.149, M.153 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:I.70, J:F.101, J:I.121 Hydrogen bonds: J:H.122, J:H.122 MPD.11: 8 residues within 4Å: Chain K: S.97, M.98, F.101, I.121, H.122, P.124, M.149, M.153 5 PLIP interactions: 5 interactions with chain K Hydrophobic interactions: K:I.121, K:P.124, K:M.149 Hydrogen bonds: K:S.97, K:H.122 MPD.12: 8 residues within 4Å: Chain L: I.70, S.97, M.98, H.122, Q.123, P.124, M.149, M.153 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:I.70 MPD.13: 8 residues within 4Å: Chain M: S.97, M.98, F.101, H.122, P.124, M.149, N.150, T.168 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:M.149 MPD.14: 7 residues within 4Å: Chain N: S.97, M.98, F.101, I.121, H.122, M.149, M.153 5 PLIP interactions: 5 interactions with chain N Hydrophobic interactions: N:F.101, N:I.121 Hydrogen bonds: N:H.122, N:H.122, N:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bewley, M.C. et al., The asymmetry in the mature amino-terminus of ClpP facilitates a local symmetry match in ClpAP and ClpXP complexes. J.Struct.Biol. (2006)

Release Date

2006-04-04

Peptides

ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

ATP-dependent Clp protease proteolytic subunit

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