SMTL ID : 1ylj.1

Atomic resolution structure of CTX-M-9 beta-lactamase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.98 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: A.75, D.76, N.111, K.112, I.114, A.115, T.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.76, A:K.112, A:A.115, A:A.75, A:N.111, A:T.140, A:T.140 Water bridges: A:N.111

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.128 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.128 Salt bridges: A:R.128 SO4.3: 7 residues within 4Å: Chain A: S.45, S.105, T.191, K.209, T.210, G.211, S.212 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.45, A:S.105, A:T.191, A:T.210, A:T.210, A:S.212, A:S.212 Water bridges: A:K.48, A:K.209, A:S.212, A:S.212 Salt bridges: A:K.209 SO4.4: 2 residues within 4Å: Chain A: Q.163, Q.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.167 Water bridges: A:G.131, A:Q.163, A:R.166, A:R.166, A:R.166 SO4.5: 2 residues within 4Å: Chain A: E.133, Q.163 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.163 Water bridges: A:E.133, A:T.134, A:T.134 SO4.6: 3 residues within 4Å: Chain A: K.63, T.177, Q.178 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.177, A:Q.178 Water bridges: A:K.63, A:K.63, A:T.177, A:T.177, A:Q.178 Salt bridges: A:K.63 SO4.7: 4 residues within 4Å: Chain A: G.118, G.119, P.120, G.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.121 Water bridges: A:G.122 SO4.8: 4 residues within 4Å: Chain A: S.247, R.248, R.249, D.250 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.247, A:R.249, A:D.250 Salt bridges: A:R.249 SO4.9: 2 residues within 4Å: Chain A: I.83, H.87 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.87, A:H.87 Salt bridges: A:H.87 SO4.10: 0 residues within 4Å: (No contacts) 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.187, A:K.187, A:K.187, A:K.187 Salt bridges: A:K.187 SO4.11: 1 residues within 4Å: Chain A: G.150 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Atomic Resolution Structures of CTX-M beta-Lactamases: Extended Spectrum Activities from Increased Mobility and Decreased Stability. J.Mol.Biol. (2005)

Release Date

2005-04-19

Peptides

beta-lactamase CTX-M-9a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

beta-lactamase CTX-M-9a

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