SMTL ID : 4dds.1 (1 other biounit)

CTX-M-9 class A beta-lactamase complexed with compound 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

3 x 0J7: 3-(pyrimidin-2-yl)-N-[3-(1H-tetrazol-5-yl)phenyl]benzamide(Non-covalent)

0J7.1: 16 residues within 4Å: Chain A: S.45, K.48, N.79, Y.80, S.105, N.107, P.142, T.143, N.145, T.146, T.210, G.211, S.212, G.213, D.214 Ligands: 0J7.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.80, A:T.143, A:N.145 Hydrogen bonds: A:S.45, A:N.79, A:S.105, A:S.105, A:N.107, A:N.145, A:S.212 Water bridges: A:S.212, A:S.212, A:D.214 0J7.2: 4 residues within 4Å: Chain A: G.118, G.121, G.122, A.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.118 0J7.3: 5 residues within 4Å: Chain A: N.79, Y.80, T.191, R.249 Ligands: 0J7.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.80 Hydrogen bonds: A:N.79 Water bridges: A:T.210, A:T.210, A:S.212 pi-Stacking: A:Y.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, D.A. et al., Structure-Based Design of Potent and Ligand-Efficient Inhibitors of CTX-M Class A Beta-Lactamase. J.Med.Chem. (2012)

Release Date

2012-03-28

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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