SMTL ID : 1ym4.1 (2 other biounits)

Crystal structure of human beta secretase complexed with NVP-AMK640

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x GLU- VAL- ASN- 24M- ALA: NVP-AMK640 INHIBITOR(Non-covalent)

GLU-VAL-ASN-24M-ALA.1: 20 residues within 4Å: Chain A: G.27, Q.28, L.46, D.48, G.50, S.51, Y.87, T.88, Q.89, I.126, I.134, R.144, Y.214, D.244, G.246, T.247, T.248, R.251, R.323, K.337 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.46, A:Y.87, A:T.88, A:Q.89, A:I.126, A:I.134 Hydrogen bonds: A:D.48, A:G.50, A:T.88, A:Q.89, A:G.246, A:T.248, A:T.248, A:T.248 Water bridges: A:Q.89, A:Q.89, A:R.144, A:R.323, A:K.337 Salt bridges: A:R.144, A:R.323, A:K.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanessian, S. et al., Structure-based design, synthesis, and memapsin 2 (BACE) inhibitory activity of carbocyclic and heterocyclic peptidomimetics. J.Med.Chem. (2005)

Release Date

2006-01-17

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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