SMTL ID : 1yqs.1

Inhibition of the R61 DD-Peptidase by N-benzoyl-beta-sultam

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

2 x BSA: 2-(BENZOYLAMINO)ETHANESULFONIC ACID(Covalent)(Non-covalent)

BSA.1: 9 residues within 4Å: Chain A: S.62, Y.159, R.285, H.298, T.299, G.300, T.301, Y.308, L.332 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.299, A:L.332 Hydrogen bonds: A:T.301 Water bridges: A:T.301 BSA.2: 8 residues within 4Å: Chain A: T.116, N.117, F.120, L.214, T.301, Y.306, S.326, N.327 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.120, A:F.120 Hydrogen bonds: A:S.326, A:N.327

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: V.204, I.205, P.206, G.207, H.209, E.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.207, A:H.209, A:E.228 GOL.4: 4 residues within 4Å: Chain A: D.45, R.50, H.209, N.211 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.50, A:H.209, A:N.211 Water bridges: A:T.48, A:T.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed, N. et al., Inactivation of Bacterial dd-Peptidase by beta-Sultams. Biochemistry (2005)

Release Date

2005-06-28

Peptides

D-alanyl-D-alanine carboxypeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-alanyl-D-alanine carboxypeptidase

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