SMTL ID : 1yuc.3 (3 other biounits)

Human Nuclear Receptor Liver Receptor Homologue-1, LRH-1, Bound to Phospholipid and a Fragment of Human SHP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x EPH: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

EPH.1: 22 residues within 4Å: Chain A: T.55, F.56, M.59, C.60, M.62, W.96, S.97, L.100, H.104, L.119, I.129, I.130, Q.133, A.134, G.135, L.138, L.141, M.142, A.227, Y.230, L.231, K.234 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.55, A:F.56, A:F.56, A:W.96, A:H.104, A:I.130, A:L.138, A:L.138, A:L.141, A:Y.230, A:Y.230, A:L.231 Hydrogen bonds: A:G.135, A:Y.230 Salt bridges: A:K.234 EPH.4: 19 residues within 4Å: Chain C: F.56, M.59, C.60, W.96, S.97, L.100, H.104, L.119, I.130, Q.133, A.134, G.135, L.138, L.141, M.142, A.227, Y.230, L.231, K.234 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:F.56, C:F.56, C:M.59, C:W.96, C:W.96, C:L.100, C:H.104, C:I.130, C:L.138, C:L.138, C:L.141, C:Y.230, C:Y.230, C:L.231 Hydrogen bonds: C:G.135, C:Y.230, C:Y.230 Salt bridges: C:K.234

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: A.193, L.196, D.197 Chain C: Q.212, L.215, R.216 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:D.197, C:R.216, C:R.216 GOL.3: 6 residues within 4Å: Chain A: E.98, L.168, S.172, D.174, L.217, R.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.217 Water bridges: A:S.172, A:R.221 GOL.5: 3 residues within 4Å: Chain A: E.189 Chain C: E.208, G.211 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.208 Water bridges: C:G.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ortlund, E.A. et al., Modulation of human nuclear receptor LRH-1 activity by phospholipids and SHP. Nat.Struct.Mol.Biol. (2005)

Release Date

2005-03-01

Peptides

Orphan nuclear receptor NR5A2: AC
Nuclear receptor 0B2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

B
D

D
C

Orphan nuclear receptor NR5A2

Nuclear receptor 0B2

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