SMTL ID : 1yuc.4 (3 other biounits)

Human Nuclear Receptor Liver Receptor Homologue-1, LRH-1, Bound to Phospholipid and a Fragment of Human SHP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x EPH: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

EPH.1: 21 residues within 4Å: Chain A: F.56, M.59, C.60, W.96, S.97, L.100, H.104, L.119, I.130, Q.133, A.134, G.135, L.138, L.141, M.142, A.227, Y.230, L.231, K.234 Chain B: H.50, E.51 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.56, A:F.56, A:M.59, A:W.96, A:W.96, A:L.100, A:H.104, A:I.130, A:L.138, A:L.138, A:L.141, A:Y.230, A:Y.230, A:L.231 Hydrogen bonds: A:G.135, A:Y.230, A:Y.230 Salt bridges: A:K.234, B:H.50 EPH.3: 24 residues within 4Å: Chain A: H.50, E.51 Chain B: T.55, F.56, M.59, C.60, M.62, W.96, S.97, L.100, H.104, L.119, I.129, I.130, Q.133, A.134, G.135, L.138, L.141, M.142, A.227, Y.230, L.231, K.234 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.55, B:F.56, B:F.56, B:W.96, B:H.104, B:I.130, B:L.138, B:L.138, B:L.141, B:Y.230, B:Y.230, B:L.231 Hydrogen bonds: B:G.135, B:Y.230 Salt bridges: B:K.234, A:H.50

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: E.208, G.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.208 Water bridges: A:G.211 GOL.4: 3 residues within 4Å: Chain B: A.193, L.196, D.197 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.197 GOL.5: 6 residues within 4Å: Chain B: E.98, L.168, S.172, D.174, L.217, R.221 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.217 Water bridges: B:S.172, B:R.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ortlund, E.A. et al., Modulation of human nuclear receptor LRH-1 activity by phospholipids and SHP. Nat.Struct.Mol.Biol. (2005)

Release Date

2005-03-01

Peptides

Orphan nuclear receptor NR5A2: AB
Nuclear receptor 0B2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Orphan nuclear receptor NR5A2

Nuclear receptor 0B2

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