- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.2: 18 residues within 4Å:- Chain A: D.18, T.19, G.20, V.21, G.22, K.23, S.24, C.25, F.35, E.70, N.123, K.124, D.126, L.127, S.153, A.154, K.155
- Ligands: MG.1
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:G.20, A:V.21, A:G.22, A:K.23, A:S.24, A:S.24, A:C.25, A:E.70, A:E.70, A:N.123, A:K.124, A:S.153, A:A.154, A:K.155
- Water bridges: A:K.124, A:R.130
- Salt bridges: A:K.23, A:D.126
- pi-Stacking: A:F.35, A:F.35
GDP.4: 17 residues within 4Å:- Chain B: D.18, T.19, G.20, V.21, G.22, K.23, S.24, C.25, F.35, N.123, K.124, D.126, L.127, S.153, A.154, K.155
- Ligands: MG.3
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:G.20, B:V.21, B:G.22, B:K.23, B:S.24, B:C.25, B:N.123, B:K.124, B:K.124, B:S.153, B:A.154, B:K.155
- Water bridges: B:K.23, B:S.24, B:S.24, B:D.40, B:G.68
- Salt bridges: B:K.23, B:D.126
- pi-Stacking: B:F.35, B:F.35
GDP.6: 19 residues within 4Å:- Chain B: Y.7
- Chain C: D.18, T.19, G.20, V.21, G.22, K.23, S.24, C.25, F.35, P.37, N.123, K.124, D.126, L.127, S.153, A.154, K.155
- Ligands: MG.5
23 PLIP interactions:22 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:G.20, C:V.21, C:G.22, C:K.23, C:S.24, C:C.25, C:N.123, C:K.124, C:K.124, C:A.154, C:K.155, C:K.155, C:K.155
- Water bridges: C:K.23, C:K.23, C:S.24, C:S.24, B:Y.7
- Salt bridges: C:K.23, C:D.126
- pi-Stacking: C:F.35, C:F.35
- pi-Cation interactions: C:K.124
GDP.8: 15 residues within 4Å:- Chain D: D.18, T.19, G.20, V.21, G.22, K.23, S.24, C.25, N.123, K.124, L.127, S.153, A.154, K.155
- Ligands: MG.7
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:G.20, D:V.21, D:G.22, D:K.23, D:S.24, D:C.25, D:N.123, D:K.124, D:A.154, D:K.155
- Water bridges: D:K.23, D:K.23, D:K.23, D:D.126
- Salt bridges: D:K.23
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)
- Release Date
- 2005-07-26
- Peptides
- Ras-related protein Rab-2A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)
- Release Date
- 2005-07-26
- Peptides
- Ras-related protein Rab-2A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D