- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.2: 18 residues within 4Å:- Chain A: S.23, P.24, M.25, C.26, E.59, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308
- Chain B: R.336
- Ligands: HBA.3
19 PLIP interactions:18 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:R.308, B:R.336
- Hydrogen bonds: A:S.23, A:S.23, A:P.24, A:C.26, A:A.60, A:Q.102, A:Q.102, A:R.215, A:R.215, A:G.284, A:G.307, A:R.308, A:R.308
- Water bridges: A:I.286, A:I.286, A:E.309
- Salt bridges: A:R.308
FMN.5: 18 residues within 4Å:- Chain A: R.336
- Chain B: S.23, P.24, M.25, C.26, E.59, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308
- Ligands: HBA.6
21 PLIP interactions:20 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:R.308, A:R.336
- Hydrogen bonds: B:S.23, B:S.23, B:P.24, B:C.26, B:A.60, B:Q.102, B:Q.102, B:R.215, B:R.215, B:G.284, B:G.307, B:R.308
- Water bridges: B:I.286, B:I.286, B:R.308, B:R.308, B:E.309, B:E.309
- Salt bridges: B:R.308
FMN.8: 18 residues within 4Å:- Chain C: S.23, P.24, M.25, C.26, E.59, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308
- Chain D: R.336
- Ligands: HBA.9
20 PLIP interactions:19 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:R.308, D:R.336
- Hydrogen bonds: C:S.23, C:S.23, C:P.24, C:C.26, C:A.60, C:Q.102, C:Q.102, C:H.167, C:R.215, C:R.215, C:G.284, C:G.307, C:R.308, C:R.308
- Water bridges: C:I.286, C:I.286, C:E.309
- Salt bridges: C:R.308
FMN.11: 18 residues within 4Å:- Chain C: R.336
- Chain D: S.23, P.24, M.25, C.26, E.59, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, M.285, I.306, G.307, R.308
- Ligands: HBA.12
22 PLIP interactions:21 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:R.308, C:R.336
- Hydrogen bonds: D:S.23, D:S.23, D:P.24, D:C.26, D:A.60, D:Q.102, D:Q.102, D:H.167, D:R.215, D:R.215, D:G.284, D:G.307, D:R.308
- Water bridges: D:I.286, D:I.286, D:R.308, D:R.308, D:E.309, D:E.309
- Salt bridges: D:R.308
- 4 x HBA: P-HYDROXYBENZALDEHYDE(Non-covalent)
HBA.3: 7 residues within 4Å:- Chain A: C.26, Y.28, I.69, H.164, H.167, Y.169
- Ligands: FMN.2
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.69, A:Y.169
- Hydrogen bonds: A:H.167
- Water bridges: A:Y.28
HBA.6: 7 residues within 4Å:- Chain B: C.26, Y.28, I.69, H.164, H.167, Y.169
- Ligands: FMN.5
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.69, B:Y.169
- Hydrogen bonds: B:H.164
- Water bridges: B:Y.28
HBA.9: 7 residues within 4Å:- Chain C: C.26, Y.28, I.69, H.164, H.167, Y.169
- Ligands: FMN.8
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:I.69, C:Y.169
- Hydrogen bonds: C:Y.28, C:H.164, C:H.167
HBA.12: 7 residues within 4Å:- Chain D: C.26, Y.28, I.69, H.164, H.167, Y.169
- Ligands: FMN.11
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.69, D:Y.169
- Hydrogen bonds: D:Y.28, D:H.164, D:H.167, D:Y.169
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kitzing, K. et al., The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes. J.Biol.Chem. (2005)
- Release Date
- 2005-05-17
- Peptides
- Probable NADH-dependent flavin oxidoreductase yqjM: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 4 x HBA: P-HYDROXYBENZALDEHYDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kitzing, K. et al., The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes. J.Biol.Chem. (2005)
- Release Date
- 2005-05-17
- Peptides
- Probable NADH-dependent flavin oxidoreductase yqjM: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B