SMTL ID : 1z83.3 (2 other biounits)

Crystal structure of human AK1A in complex with AP5A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)

ZN.1: 1 residues within 4Å: Ligands: AP5.4 No protein-ligand interaction detected (PLIP) ZN.2: 2 residues within 4Å: Chain A: E.27, H.37 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.27, A:H.37, H2O.4, H2O.4 ZN.3: 3 residues within 4Å: Chain A: E.71, D.75, R.109 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.71, A:D.75, A:D.75

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.4: 31 residues within 4Å: Chain A: G.17, P.18, G.19, S.20, G.21, K.22, G.23, T.24, T.40, G.41, L.44, R.45, M.62, Q.66, L.67, V.68, V.73, G.95, Y.96, R.98, Q.102, R.129, L.130, R.133, R.139, D.141, R.150, G.178, S.179, V.180 Ligands: ZN.1 45 PLIP interactions: 45 interactions with chain A Hydrogen bonds: A:G.19, A:S.20, A:G.21, A:K.22, A:G.23, A:T.24, A:T.24, A:T.40, A:G.41, A:Q.66, A:V.68, A:Q.102, A:Q.102, A:R.129, A:G.178 Water bridges: A:K.22, A:K.22, A:T.24, A:R.45, A:R.45, A:R.98, A:R.98, A:R.98, A:R.98, A:R.98, A:R.98, A:R.129, A:R.129, A:R.133, A:R.139, A:R.139, A:R.139 Salt bridges: A:K.22, A:K.22, A:K.22, A:R.45, A:R.133, A:R.133, A:R.139, A:R.139, A:R.139, A:R.150, A:R.150 pi-Cation interactions: A:R.98, A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippakopoulos, P. et al., Crystal structure of human AK1A in complex with AP5A. To be Published

Release Date

2005-04-26

Peptides

Adenylate kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Adenylate kinase 1

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