SMTL ID : 1zao.1

Crystal Structure of A.fulgidus Rio2 Kinase Complexed With ATP and Manganese Ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: N.223, D.235 Ligands: MN.2, PO4.3, ATP.4 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.235, H2O.13 MN.2: 6 residues within 4Å: Chain A: E.103, D.218, D.235 Ligands: MN.1, PO4.3, ATP.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.103, A:D.235, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 8 residues within 4Å: Chain A: E.103, D.218, Y.222, N.223, D.235 Ligands: MN.1, MN.2, ATP.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.103, A:N.223 Water bridges: A:S.220, A:Y.222, A:N.223

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 22 residues within 4Å: Chain A: M.98, E.103, S.104, V.106, V.118, K.120, H.122, H.126, P.167, M.179, E.180, L.181, I.182, E.186, Y.222, N.223, I.234, D.235, P.237 Ligands: MN.1, MN.2, PO4.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.104, A:E.180, A:I.182, A:E.186 Water bridges: A:G.101, A:S.104, A:S.104, A:K.123, A:Y.222, A:N.223 Salt bridges: A:K.120, A:K.120, A:K.120, A:H.122, A:H.126

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: Q.162, G.163, L.164, V.166, P.167, K.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.162, A:G.163 Water bridges: A:L.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laronde-Leblanc, N. et al., Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. Febs J. (2005)

Release Date

2005-06-21

Peptides

Rio2 serine kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rio2 serine kinase

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