SMTL ID : 1zct.1 (1 other biounit)

structure of glycogenin truncated at residue 270 in a complex with UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.122, D.124, H.232 Ligands: UDP.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.122, A:D.124, A:D.124, A:H.232 MN.3: 4 residues within 4Å: Chain B: D.122, D.124, H.232 Ligands: UDP.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.122, B:D.124, B:D.124, B:H.232

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 14 residues within 4Å: Chain A: L.29, T.30, T.31, N.32, Y.35, V.102, D.122, A.123, D.124, H.232, L.234, G.235, K.238 Ligands: MN.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.102 Hydrogen bonds: A:L.29, A:L.29, A:T.31, A:T.31, A:T.31, A:N.32, A:Y.35, A:Y.35, A:A.123, A:D.124, A:D.124, A:G.235 Water bridges: A:N.153 Salt bridges: A:H.232, A:K.238, A:K.238 pi-Stacking: A:Y.35 UDP.4: 14 residues within 4Å: Chain B: L.29, T.30, T.31, N.32, Y.35, V.102, D.122, A.123, D.124, H.232, L.234, G.235, K.238 Ligands: MN.3 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.102 Hydrogen bonds: B:L.29, B:L.29, B:T.31, B:T.31, B:N.32, B:Y.35, B:A.123, B:D.124, B:D.124, B:G.235 Water bridges: B:N.153 Salt bridges: B:H.232, B:K.238, B:K.238 pi-Stacking: B:Y.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hurley, T.D. et al., Requirements for catalysis in mammalian glycogenin. J.Biol.Chem. (2005)

Release Date

2005-04-26

Peptides

Glycogenin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycogenin-1

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