SMTL ID : 1zdj.2 (4 other biounits)

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-15-mer

Ligands

10 x G- G- A- U- C- A- C- C: RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*C)-3')(Non-covalent)

G-G-A-U-C-A-C-C.1: 16 residues within 4Å: Chain A: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Chain N: R.49, S.51, S.52, N.55, K.57, T.91 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.2: 9 residues within 4Å: Chain C: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.3: 16 residues within 4Å: Chain B: R.49, S.51, S.52, N.55, K.57, T.91 Chain D: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.4: 9 residues within 4Å: Chain F: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.5: 16 residues within 4Å: Chain E: R.49, S.51, S.52, N.55, K.57, T.91 Chain G: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.6: 9 residues within 4Å: Chain I: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.7: 16 residues within 4Å: Chain H: R.49, S.51, S.52, N.55, K.57, T.91 Chain J: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.8: 9 residues within 4Å: Chain L: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.9: 16 residues within 4Å: Chain K: R.49, S.51, S.52, N.55, K.57, T.91 Chain M: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.10: 9 residues within 4Å: Chain O: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grahn, E. et al., Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements. RNA (1999)

Release Date

1998-07-08

Peptides

PROTEIN (MS2 PROTEIN CAPSID): ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

PROTEIN (MS2 PROTEIN CAPSID)

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