SMTL ID : 1zdj.3 (4 other biounits)

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-18-mer

Ligands

12 x G- G- A- U- C- A- C- C: RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*C)-3')(Non-covalent)

G-G-A-U-C-A-C-C.1: 10 residues within 4Å: Chain A: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.2: 14 residues within 4Å: Chain C: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Chain I: R.49, S.51, S.52, N.55, K.57 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.3: 16 residues within 4Å: Chain B: R.49, S.51, S.52, N.55, K.57, T.91 Chain D: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.4: 14 residues within 4Å: Chain F: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Chain O: R.49, S.51, S.52, N.55, K.57 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.5: 16 residues within 4Å: Chain G: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Chain K: R.49, S.51, S.52, N.55, K.57, T.91 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.6: 14 residues within 4Å: Chain C: R.49, S.51, S.52, N.55, K.57 Chain I: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.7: 10 residues within 4Å: Chain J: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.8: 14 residues within 4Å: Chain L: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Chain R: R.49, S.51, S.52, N.55, K.57 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.9: 10 residues within 4Å: Chain M: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.10: 14 residues within 4Å: Chain F: R.49, S.51, S.52, N.55, K.57 Chain O: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.11: 16 residues within 4Å: Chain N: R.49, S.51, S.52, N.55, K.57, T.91 Chain P: V.29, K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available G-G-A-U-C-A-C-C.12: 14 residues within 4Å: Chain L: R.49, S.51, S.52, N.55, K.57 Chain R: K.43, T.45, C.46, S.47, T.59, K.61, E.63, Y.85, N.87 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grahn, E. et al., Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements. RNA (1999)

Release Date

1998-07-08

Peptides

PROTEIN (MS2 PROTEIN CAPSID): ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

PROTEIN (MS2 PROTEIN CAPSID)

Related Entries With Identical Sequence