SMTL ID : 1zmj.1

Crystal Structure of the Catalytic Domain of Factor XI in complex with 4-(guanidinomethyl)-phenylboronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.37, Q.77, K.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.77 Water bridges: A:K.98, A:K.98 Salt bridges: A:K.98 SO4.2: 1 residues within 4Å: Chain A: N.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.104

1 x HDB: (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)BENZYL)GUANIDINE(Covalent)

HDB.3: 15 residues within 4Å: Chain A: L.28, C.29, H.44, D.182, A.183, C.184, K.185, G.186, D.187, S.188, W.208, G.209, G.211, C.212, G.219 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.44, A:G.186, A:S.188, A:W.208, A:G.211 Water bridges: A:W.208, A:E.210 Salt bridges: A:D.182

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 5 residues within 4Å: Chain A: F.74, T.102, V.103, N.104, Q.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.104, A:N.104, A:Q.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarova, T.I. et al., Synthesis and in vitro biological evaluation of aryl boronic acids as potential inhibitors of factor XIa. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-05-09

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI

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