SMTL ID : 1zml.1

Crystal Structure of the Catalytic Domain of Factor XI in complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenethyl)guanidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: N.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.104 SO4.2: 9 residues within 4Å: Chain A: V.153, E.157, R.161, G.175, Y.176, R.177, E.216, R.217, P.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.157, A:E.157, A:Y.176, A:E.216, A:R.217 Salt bridges: A:R.161 SO4.3: 3 residues within 4Å: Chain A: Q.37, Q.77, K.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.37 Water bridges: A:E.100 Salt bridges: A:K.98 SO4.5: 4 residues within 4Å: Chain A: E.11, W.12, W.128, W.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.11 Salt bridges: A:K.147 SO4.6: 3 residues within 4Å: Chain A: T.125, D.126, K.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.126 Salt bridges: A:K.149 SO4.7: 3 residues within 4Å: Chain A: I.34, L.114, T.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.235, A:T.235

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.4: 3 residues within 4Å: Chain A: F.74, N.104, Q.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.109

1 x 412: (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENETHYL)GUANIDINE(Covalent)

412.8: 15 residues within 4Å: Chain A: L.28, C.29, H.44, D.182, A.183, C.184, K.185, G.186, D.187, S.188, W.208, G.209, G.211, C.212, G.219 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.185 Hydrogen bonds: A:H.44, A:G.186, A:S.188, A:W.208, A:G.211 Water bridges: A:W.208 Salt bridges: A:D.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarova, T.I. et al., Synthesis and in vitro biological evaluation of aryl boronic acids as potential inhibitors of factor XIa. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-05-09

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI

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