- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 7 residues within 4Å:- Chain A: L.78, S.80, T.303, H.304, V.305, S.306, D.307
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:L.78, A:V.305, A:D.307, H2O.2
CA.6: 7 residues within 4Å:- Chain B: L.78, S.80, T.303, H.304, V.305, S.306, D.307
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.78, B:V.305, B:D.307, H2O.5
CA.10: 7 residues within 4Å:- Chain C: L.78, S.80, T.303, H.304, V.305, S.306, D.307
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:L.78, C:V.305, C:D.307, H2O.7
CA.14: 7 residues within 4Å:- Chain D: L.78, S.80, T.303, H.304, V.305, S.306, D.307
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:L.78, D:V.305, D:D.307, H2O.10
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.3: 14 residues within 4Å:- Chain A: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
- Chain C: T.302, T.303
14 PLIP interactions:4 interactions with chain C, 10 interactions with chain A- Hydrogen bonds: C:T.303, C:T.303, A:T.110, A:G.111, A:A.112, A:N.115, A:E.210, A:Q.246
- Water bridges: C:T.303, C:T.303
- Hydrophobic interactions: A:E.210, A:A.245, A:K.272
- Salt bridges: A:K.272
PLP.7: 14 residues within 4Å:- Chain B: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
- Chain D: T.302, T.303
14 PLIP interactions:10 interactions with chain B, 4 interactions with chain D- Hydrophobic interactions: B:E.210, B:A.245, B:K.272
- Hydrogen bonds: B:T.110, B:G.111, B:A.112, B:N.115, B:E.210, B:Q.246, D:T.303, D:T.303
- Salt bridges: B:K.272
- Water bridges: D:T.303, D:T.303
PLP.11: 14 residues within 4Å:- Chain A: T.302, T.303
- Chain C: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
17 PLIP interactions:14 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:E.210, C:A.245, C:K.272
- Hydrogen bonds: C:T.110, C:G.111, C:A.112, C:N.115, C:E.210, C:E.210, C:Q.246, A:T.303, A:T.303, A:T.303
- Water bridges: C:T.110, C:S.271, C:K.272
- Salt bridges: C:K.272
PLP.15: 14 residues within 4Å:- Chain B: T.302, T.303
- Chain D: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
17 PLIP interactions:14 interactions with chain D, 3 interactions with chain B- Hydrophobic interactions: D:E.210, D:A.245, D:K.272
- Hydrogen bonds: D:T.110, D:G.111, D:A.112, D:N.115, D:E.210, D:E.210, D:Q.246, B:T.303, B:T.303, B:T.303
- Water bridges: D:T.110, D:S.271, D:K.272
- Salt bridges: D:K.272
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.4: 7 residues within 4Å:- Chain A: Q.52, W.138, S.215, Q.246, K.272, R.406
- Chain C: Y.301
6 PLIP interactions:1 interactions with chain C, 5 interactions with chain A- Hydrogen bonds: C:Y.301, A:W.138, A:Q.246
- Water bridges: A:R.406
- Salt bridges: A:K.272, A:R.406
MES.8: 7 residues within 4Å:- Chain B: Q.52, W.138, S.215, Q.246, K.272, R.406
- Chain D: Y.301
6 PLIP interactions:1 interactions with chain D, 5 interactions with chain B- Hydrogen bonds: D:Y.301, B:W.138, B:Q.246
- Water bridges: B:R.406
- Salt bridges: B:K.272, B:R.406
MES.12: 7 residues within 4Å:- Chain A: Y.301
- Chain C: Q.52, W.138, S.215, Q.246, K.272, R.406
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:W.138, C:Q.246
- Water bridges: C:R.406
- Salt bridges: C:K.272, C:R.406
MES.16: 7 residues within 4Å:- Chain B: Y.301
- Chain D: Q.52, W.138, S.215, Q.246, K.272, R.406
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.246
- Water bridges: D:R.406
- Salt bridges: D:K.272, D:R.406
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Crystal structures of dialkylglycine decarboxylase bound with cesium ion and calcium ion. To be Published
- Release Date
- 2006-08-08
- Peptides
- 2,2-dialkylglycine decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Crystal structures of dialkylglycine decarboxylase bound with cesium ion and calcium ion. To be Published
- Release Date
- 2006-08-08
- Peptides
- 2,2-dialkylglycine decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A