- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CS: CESIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: A.95, T.98, P.99, L.102
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.98, A:T.98, A:L.102, A:L.102
NA.6: 4 residues within 4Å:- Chain B: A.95, T.98, P.99, L.102
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.98, B:T.98, B:T.98, B:L.102
NA.10: 4 residues within 4Å:- Chain C: A.95, T.98, P.99, L.102
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.98, C:L.102, C:L.102
NA.14: 4 residues within 4Å:- Chain D: A.95, T.98, P.99, L.102
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:A.95, D:T.98, D:L.102
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.3: 9 residues within 4Å:- Chain A: Q.52, W.138, A.152, S.215, Q.246, K.272, V.396, R.406
- Ligands: PLP.4
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:Q.52, A:S.215, A:Q.246
- Water bridges: A:S.215, A:K.272, C:Y.301
- Salt bridges: A:K.272, A:R.406
MES.7: 9 residues within 4Å:- Chain B: Q.52, W.138, A.152, S.215, Q.246, K.272, V.396, R.406
- Ligands: PLP.8
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:Q.52, B:S.215, B:Q.246
- Water bridges: B:S.215, B:K.272, D:Y.301
- Salt bridges: B:K.272, B:R.406
MES.11: 9 residues within 4Å:- Chain C: Q.52, W.138, A.152, S.215, Q.246, K.272, V.396, R.406
- Ligands: PLP.12
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:Q.52, C:S.215, C:Q.246
- Water bridges: C:S.215, C:R.406
- Salt bridges: C:K.272, C:R.406
MES.15: 9 residues within 4Å:- Chain D: Q.52, W.138, A.152, S.215, Q.246, K.272, V.396, R.406
- Ligands: PLP.16
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:Q.52, D:S.215, D:Q.246
- Water bridges: D:S.215, D:R.406
- Salt bridges: D:K.272, D:R.406
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.4: 15 residues within 4Å:- Chain A: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
- Chain C: T.302, T.303
- Ligands: MES.3
16 PLIP interactions:3 interactions with chain C, 13 interactions with chain A- Hydrogen bonds: C:T.303, C:T.303, A:T.110, A:T.110, A:G.111, A:A.112, A:N.115, A:Q.246
- Water bridges: C:H.304, A:W.138, A:E.210, A:K.272
- Hydrophobic interactions: A:E.210, A:K.272
- Salt bridges: A:K.272
- pi-Stacking: A:W.138
PLP.8: 15 residues within 4Å:- Chain B: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
- Chain D: T.302, T.303
- Ligands: MES.7
16 PLIP interactions:13 interactions with chain B, 3 interactions with chain D- Hydrophobic interactions: B:E.210, B:K.272
- Hydrogen bonds: B:T.110, B:T.110, B:G.111, B:A.112, B:N.115, B:Q.246, D:T.303, D:T.303
- Water bridges: B:W.138, B:E.210, B:K.272, D:H.304
- Salt bridges: B:K.272
- pi-Stacking: B:W.138
PLP.12: 15 residues within 4Å:- Chain A: T.302, T.303
- Chain C: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
- Ligands: MES.11
16 PLIP interactions:12 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:E.210, C:K.272
- Hydrogen bonds: C:T.110, C:G.111, C:A.112, C:N.115, C:Q.246, A:T.303, A:T.303, A:T.303
- Water bridges: C:T.110, C:W.138, C:E.210, A:H.304
- Salt bridges: C:K.272
- pi-Stacking: C:W.138
PLP.16: 15 residues within 4Å:- Chain B: T.302, T.303
- Chain D: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272
- Ligands: MES.15
16 PLIP interactions:12 interactions with chain D, 4 interactions with chain B- Hydrophobic interactions: D:E.210, D:K.272
- Hydrogen bonds: D:T.110, D:G.111, D:A.112, D:N.115, D:Q.246, B:T.303, B:T.303, B:T.303
- Water bridges: D:T.110, D:W.138, D:E.210, B:H.304
- Salt bridges: D:K.272
- pi-Stacking: D:W.138
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Crystal structures of dialkylglycine decarboxylase bound with cesium ion and calcium ion. To be Published
- Release Date
- 2006-08-08
- Peptides
- 2,2-dialkylglycine decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CS: CESIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Crystal structures of dialkylglycine decarboxylase bound with cesium ion and calcium ion. To be Published
- Release Date
- 2006-08-08
- Peptides
- 2,2-dialkylglycine decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A