SMTL ID : 1ztj.1

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Benzylamino-2-methylsulfanyl-6-oxo-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.37, Q.77, K.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.77, A:Q.77 Water bridges: A:K.98, A:K.98 Salt bridges: A:K.98 SO4.2: 1 residues within 4Å: Chain A: N.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.104

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.3: 2 residues within 4Å: Chain A: K.195, W.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.195, A:K.195

1 x 632: 2-(5-BENZYLAMINO-2-METHYLSULFANYL-6-OXO-6H-PYRIMIDIN-1-YL)-N-[4-GUANIDINO-1-(THIAZOLE-2-CARBONYL)-BUTYL]-ACETAMIDE(Covalent)

632.4: 17 residues within 4Å: Chain A: H.44, E.89, H.165, D.182, A.183, C.184, K.185, G.186, D.187, S.188, S.207, W.208, G.209, E.210, G.211, C.212, G.219 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.208, A:W.208, A:E.210 Hydrogen bonds: A:E.89, A:A.183, A:G.186, A:D.187, A:S.188, A:S.188, A:S.207, A:G.209, A:G.209, A:G.211 Water bridges: A:W.208, A:G.211, A:V.220 Salt bridges: A:D.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagafuji, P. et al., Pyrimidinone Inhibitors of a Thrombolytic Protease. To be Published

Release Date

2006-05-09

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI

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